RNA id: TU1957476


Basic Information

Item Value
RNA id TU1957476
length 806
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1708863
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13459602 ~ 13460407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTatatgtattttaacagcaacagttccaacctagactttcTTTCAACAATCATTtttacagtaagatgtacagtaggcctgatcatttctacagtaagatgtactgtaggcctgatcctttctacagtaagatgtacagtaggcctgatcatttctacagtaagatgtacagtaggcctgatcatttctacagtaagatgtacagtaggcctgatcatttctacagtaagatgtacagtaggcctgataaATTTTCATCATCTGTACTGTTACTAGGGTTGCACTctagtagctagctactgtaagaGTTAGTACACCCTTATTTCTGCTTATCATCacctgttataaaatgacaacaatgccttGCTAGCTGACTTACTTTTCCACTGTCGATGCACCGTTTCCTGAAACATTCTGCCTTGTTCTGAAAGAACTTACCACCATGCTGTGGATGGTTGGTTAGGACGTGTcgttttattcatttattcagaAAAAAGATCTGGTAAACCGCAAAGCACACAGgcatctccctctcccactcgcACAGCTACCAAACTAGAGaccgctgctaagcagagagcgcactgcacagagagcgcactgaacagagagcgcacTGCACAGAGAGCGCACTGCACAGAGAGCGCACTGcacagagagcgcactgaacagagagcgcactgaacagagagcgcactgaacagagagcgcactgaacagagagcgcactgaacagagagcgcacTGCACAGAGAGCGCACTGCACAGAGAGCGCACTGCACAGAGAGCGCACTGCACAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1957469 lncRNA upstream 11971 13447353 ~ 13447631 (+) True G1708856
TU1957468 lncRNA upstream 13627 13445681 ~ 13445975 (+) True G1708855
TU1957461 lncRNA upstream 33662 13425670 ~ 13425940 (+) True G1708848
TU1957459 lncRNA upstream 36419 13422982 ~ 13423183 (+) True G1708846
TU1957457 lncRNA upstream 40909 13418478 ~ 13418693 (+) True G1708844
TU1957477 lncRNA downstream 817 13461224 ~ 13461637 (+) True G1708864
TU1957479 lncRNA downstream 13262 13473669 ~ 13473889 (+) True G1708866
TU1957735 lncRNA downstream 47958 13508365 ~ 13509076 (+) False G1709086
TU1957737 lncRNA downstream 47958 13508365 ~ 13516872 (+) True G1709086
TU1957752 lncRNA downstream 87706 13548113 ~ 13549467 (+) True G1709101
LOC118942887 mRNA upstream 227776 13231075 ~ 13231826 (+) True LOC118942887
XM_021564127.2 mRNA upstream 230208 13227798 ~ 13229394 (+) True LOC110490653
XM_036956971.1 mRNA upstream 385233 13070036 ~ 13074369 (+) False LOC110490647
XM_036956994.1 mRNA downstream 238110 13698517 ~ 13725137 (+) False LOC110500963
XM_036956480.1 mRNA downstream 278651 13739058 ~ 13748205 (+) False crp
NM_001124725.1 mRNA downstream 279064 13739471 ~ 13748205 (+) False crp
XM_036956479.1 mRNA downstream 279250 13739657 ~ 13748205 (+) True crp
XM_036957001.1 mRNA downstream 334572 13794979 ~ 13950432 (+) False LOC110499758
TU1957306 other upstream 357769 13099841 ~ 13101833 (+) True G1708702
TU1957288 other upstream 405633 13052533 ~ 13053969 (+) True LOC110490642
TU1957204 other upstream 507087 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 645874 12800768 ~ 12813728 (+) True LOC110490810
TU1957032 other upstream 674100 12784207 ~ 12785502 (+) True G1708495
TU1957974 other downstream 295779 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 460151 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 486238 13946645 ~ 13950916 (+) True LOC110499758
TU1958344 other downstream 605442 14065849 ~ 14066683 (+) True G1709592
TU1958620 other downstream 1073976 14534383 ~ 14537036 (+) True LOC118942889

Expression Profile