RNA id: TU1957737


Basic Information

Item Value
RNA id TU1957737
length 427
lncRNA type intronic
GC content 0.38
exon number 3
gene id G1709086
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13508365 ~ 13516872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAGAGTGAGCACCAGCTGTCTGTGTTGGGGAAGCAAAGCAACATGTGTAGGGAGAATTTGAACCGAGACGCCAGCAACGGCTGCTCAATTGGAGAGGTCTTTTAAGGATACTTGTGTAGGCTACATGATTAGTAACAAACAAACGGAGTgatgcatttaaacacaaacagtaggcatttaaacaccaacagtatgcatttaaacaccaactgtatgcatttaaacaccaactgtatgcatttaaacaccaactgtatgcatttaaacacaaacagtatgcatttaaacaccaactgtatgcatttaaacaccaactgtatgcatttaaacaccaactgtatgcatttaaacaccaactgtatgcatttaaacaccaactgtatgcatttaaacaccaactgtatgcatttaaacacaaacagtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1957479 lncRNA upstream 34476 13473669 ~ 13473889 (+) True G1708866
TU1957477 lncRNA upstream 46728 13461224 ~ 13461637 (+) True G1708864
TU1957476 lncRNA upstream 47958 13459602 ~ 13460407 (+) True G1708863
TU1957469 lncRNA upstream 60734 13447353 ~ 13447631 (+) True G1708856
TU1957468 lncRNA upstream 62390 13445681 ~ 13445975 (+) True G1708855
TU1957752 lncRNA downstream 31241 13548113 ~ 13549467 (+) True G1709101
TU1957763 lncRNA downstream 49493 13566365 ~ 13567039 (+) True G1709109
TU1957874 lncRNA downstream 118539 13635411 ~ 13647478 (+) False G1709192
TU1957875 lncRNA downstream 118539 13635411 ~ 13640108 (+) True G1709192
TU1957883 lncRNA downstream 123478 13640350 ~ 13679130 (+) False G1709194
LOC118942887 mRNA upstream 276539 13231075 ~ 13231826 (+) True LOC118942887
XM_021564127.2 mRNA upstream 278971 13227798 ~ 13229394 (+) True LOC110490653
XM_036956971.1 mRNA upstream 433996 13070036 ~ 13074369 (+) False LOC110490647
XM_036956994.1 mRNA downstream 181645 13698517 ~ 13725137 (+) False LOC110500963
XM_036956480.1 mRNA downstream 222186 13739058 ~ 13748205 (+) False crp
NM_001124725.1 mRNA downstream 222599 13739471 ~ 13748205 (+) False crp
XM_036956479.1 mRNA downstream 222785 13739657 ~ 13748205 (+) True crp
XM_036957001.1 mRNA downstream 278107 13794979 ~ 13950432 (+) False LOC110499758
TU1957306 other upstream 406532 13099841 ~ 13101833 (+) True G1708702
TU1957288 other upstream 454396 13052533 ~ 13053969 (+) True LOC110490642
TU1957204 other upstream 555850 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 694637 12800768 ~ 12813728 (+) True LOC110490810
TU1957032 other upstream 722863 12784207 ~ 12785502 (+) True G1708495
TU1957974 other downstream 239314 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 403686 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 429773 13946645 ~ 13950916 (+) True LOC110499758
TU1958344 other downstream 548977 14065849 ~ 14066683 (+) True G1709592
TU1958620 other downstream 1017511 14534383 ~ 14537036 (+) True LOC118942889

Expression Profile