RNA id: TU1957880


Basic Information

Item Value
RNA id TU1957880
length 1484
lncRNA type antisense_over
GC content 0.45
exon number 4
gene id G1709194
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13640350 ~ 13679130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATCTCAAACAATTtgttgagtttgccccaccaagatgtacatgctaaaatcgtcaCTGGCAGAGCAAACTAAAATCCCCCTGTTCAATATGAAAACCAAGAAACACGGAAATTACAATAGCTTCAAACTGAATGCTTTATTATGATTATATAATGAGATAATAAGCATTAAAAAGGATTCCATCCATCTCTATGAATAACCTCTGAAGCAAGATCATTAAGATCAGTGATTACTATTGACAGAGATAAAGTACTGAAAAGTATAGTTAGAGTAGTAGGTTTTAGAATGAAGGATTCTTAtgaactgatgttgggcaatcTCAAGCGGAAGGCTGTTCCAGAAAGAGAGATCGATGAGTTAGCAAGTGAACTTTAGACAGATCCCGAACGGCCATCAGATGCAGAGGAGAGGCTAAGGTGTGCACACCATGGTGACTCCAGACTTGGAGACCACCCAAAGACGGCCCAGGTCGTAGGTCACGTGGCCCATGAGCATGCACATTGGGACATTGCTCCATCCGGTGCCCTCTGGTTTACTGGCTGTGATGCCGTCTCTGGTATAAACGTGGCCTGCAGAGTTGACCCCAAAGACACCACCATCAGTTGCCACTTCAATCATGGAAAGCTTGCCGCCAATGTGACTCCACCCGTTGTTTTGGCAGTCTTGATTCAGACTCATTAAGTAGATATCATCATTCTTGTTGACTGCCCAGCACCCAAAAGGTCCGCAACTAGAATACTTCACACTTCCTGGCAATCCTGTCCATGGAAGAGGTGAGCCTGGACCCTTGTAGCCAACTGTGGCACTACGTGTCAGACAGTATGGTGTATCGTCCACGTTGGCCCCCACAATAAACTGTTCACCTCCAGCATCCAACTGTTTCAGAAGGCCTGCAGCTTGCACCCAGTTACCGGCCACATACTTGTGGATTGAGTCTGCCTTGTTGATACCCCAGATCCCTGCTGGTCCTACAGTGATATGCTTCAGGGAACCAGGCAGGCGGATCCATTCATCACCTACCAGGTAGTAGGGGATTTGACTTGTGTCTGTTGCAACCACTTGTCCCAGTCCTGCATCGATCTGCATCAGATTCTTGATGTTTACTACCTCCTGACAGTCCCATGCTATGGAGACAAAGACATGAGTAGAGCACACAGCCAACAAGGAGGATGAAATTATGGAGCGAACTTGATGATCAATTCCAAGTTGAGCAAGCATGTTTCAGATGATGGTAACTTACCATGACTGATGGCCAGGAGACATTGGACCAATAGGACGGATGCAGTTGCTCTCATGATGTCTCAGTAGATCTACGGTATACGTTTGGTTGTAAACCAGACTTCAATTGTCCCCTTGCAAGACTGCGCTTTTATAGTGTTGTGGAAAATATTTAATCAAATAATTCACCAATAGCGGAACATGTGAATTCAATTACACTTTATTACAAAGTAACAGAGCCGAGCAATTCCATGGAACAACTGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1957887 lncRNA upstream 20086 13640350 ~ 13656666 (+) False G1709194
TU1957874 lncRNA upstream 29274 13635411 ~ 13647478 (+) False G1709192
TU1957875 lncRNA upstream 36644 13635411 ~ 13640108 (+) True G1709192
TU1957763 lncRNA upstream 109713 13566365 ~ 13567039 (+) True G1709109
TU1957752 lncRNA upstream 127285 13548113 ~ 13549467 (+) True G1709101
TU1957947 lncRNA downstream 35552 13714682 ~ 13717024 (+) False G1709252
TU1957948 lncRNA downstream 35552 13714682 ~ 13717024 (+) True G1709252
TU1957958 lncRNA downstream 42942 13722072 ~ 13722329 (+) True G1709262
TU1957946 lncRNA downstream 45620 13724750 ~ 13725099 (+) True LOC110500963
TU1957964 lncRNA downstream 69205 13748335 ~ 13751291 (+) True G1709268
LOC118942887 mRNA upstream 444926 13231075 ~ 13231826 (+) True LOC118942887
XM_021564127.2 mRNA upstream 447358 13227798 ~ 13229394 (+) True LOC110490653
XM_036956971.1 mRNA upstream 602383 13070036 ~ 13074369 (+) False LOC110490647
XM_036956994.1 mRNA downstream 19387 13698517 ~ 13725137 (+) False LOC110500963
XM_036956480.1 mRNA downstream 59928 13739058 ~ 13748205 (+) False crp
NM_001124725.1 mRNA downstream 60341 13739471 ~ 13748205 (+) False crp
XM_036956479.1 mRNA downstream 60527 13739657 ~ 13748205 (+) True crp
XM_036957001.1 mRNA downstream 115849 13794979 ~ 13950432 (+) False LOC110499758
TU1957306 other upstream 574919 13099841 ~ 13101833 (+) True G1708702
TU1957288 other upstream 622783 13052533 ~ 13053969 (+) True LOC110490642
TU1957204 other upstream 724237 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 863024 12800768 ~ 12813728 (+) True LOC110490810
TU1957032 other upstream 891250 12784207 ~ 12785502 (+) True G1708495
TU1957974 other downstream 77056 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 241428 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 267515 13946645 ~ 13950916 (+) True LOC110499758
TU1958344 other downstream 386719 14065849 ~ 14066683 (+) True G1709592
TU1958620 other downstream 855253 14534383 ~ 14537036 (+) True LOC118942889

Expression Profile