RNA id: TU1957964


Basic Information

Item Value
RNA id TU1957964
length 2935
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G1709268
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13748335 ~ 13751291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACATTTGAATGTATTTTATTATTAAAGCCATTAAAATTGAACCATGCCCAATATATTAACATCTGAAGCAGGGTTACGGTGATGTCCTGAAGAAGGCGGAGAGGCACTGTAGATGATCATGTGCTTTTCACATGGTGGCAGCTGGGGGAAAAATGACATTTGTTGGAAGAGCCGGTGTGAAAAGCCTGATCCCAGATCCGTTTGTGTTCTTGACAACTCCATTCCTCATTGTCAAGTCAAACATGTTTGACTTGACAATGGGTGACAAGGAATTGGCATGTGTACAAACAGTGGCACTCAGGCTAGTGTGAATATTTCTCTGGAACCGAAACAGAACCTGGATGAGCTCTATACCTGTAGGTTGTTTATGATGACCGCTGAGCTCCTTTTAGATGTAGGTGAGCCTGCAAAATGATCCACTGTGTCCCTCACTGATGTAGACATGACCACACAACATGGTATACCTTTTAATACCACACAGGACTCTAGTTCCCAAAAGCCTGTTTTAGCACaggcagcaccattgaggactttcaccatttttAAGTAGTTAACGAAGGGTCgcataattccatccaggtcaccaCCAATGAATTATACTCGTGGGCAAACACCCAATACCTGCAGGTGGTGGTAAATCGCCAACCTTGGCGTTCAAACAACCCACTCCAGGTGGCACTTTGCCAACTGATTAAAGTAGAAAATGTACTTACAAAAATGGAGATCGCCTCAATGGTGCGTCCCGTGCTCTGACGTCATGATGTCTAAACCCATGCTTCATACCTCTTATCCTGGATTACAGCGTACGATGACACGCATGATTTCAGTTTAGAAAAAAATACTGTCATTATTTCCCTTGCATCTCGTACATCCAGTGGTGTAACAAACCCAGCAATATGACATAGAAAAAACCTTTACTTCCAGTATAATCCAACCACCAGCATGGAACATTAATATTACACTTCGGCAGGCTGGACCAGACTTGATATCTGGAGCCTGCAGACCGAGAAGGAGGACTTGCACTGAAGATACACACTGGATTTAAAAAACAAAAGCGAACATACCGAAGAAAGTACTTGTAAATACTgaacattcactatatacagacACATGGCTATCACTGGGCAGCTTGGATGGGGGGGGGTCAACAGTATGgcgacagcccaatgtccaagcATCACACATGCAGTGTAGTTTGCAGGGTTAAAATGCCTTTAGACAGCAGTGTCGGACATCACTAAAAGCTACAGTCATACAATTGGATTATAATCGGGGAGTTCTCTTTTCCATTTGGTTGGATGAAATCAACGTTTAAAAAGGAGCAGCTTCAACTGACAAAATAAAATCACTCACGAAGAAAACTAGATTGTTTATGTACAGATGGACATATTTGACATTTCAGTCCGTCCTTGCGCTGCCGCTGCGTAGAGACTAGCGGGAAATGTAATGAGCAATAACAGATGAGAACCCAGAAGGGGCAGGTCTCGGGGTTTATATACCTTTTTCTCATTGGGCCCGAGCTCCGTCAATCGGTAAACATTGAAGTGTTTGTCGGGAGTACGCCTGTATTTCTTCAGTAACGGCGAGACCGGAAACAGAAAGGTGATCAGTGCATTGTCATAGGCAGACAAACAAAAGGACCCccatcccccccacacacacacaaaaaaaatacacacatGGAATGAACCTTTCTTGTAAACTCCCAGAACCATCCATTCAGTCTGGGATGGAATGGCCTCATCTTCCCCTGACTCTAGTTGATCTCTCACTAACACTActcttgaagtgtgtgtgtgtcgacttTTCTAGTGAAGGTCTCAGGGCACCATGTCAGACATCCATATACAACTTGTAGCAGATGTTTTcttgataaaaaaaacaaatttaaAATAAGATGATACTATAACATTTGATCTATACATAGAGTTAAAATAAATATGCTTGCATCACATTATAAGTAGGATGTCGCTCCTATCTGCACCTTCAATACCTTGTGAAAGAGACCACTGggaacagaccccccccccccaacaattgCAAATGCCATTTTATGACATACTGACAAGTTTAACAACTTTGGCAATTCTAAGCAATCCTCAGGGTGACTTGAACGATGGTACATGACCATGCCATAGTGAGTATCCCTTATCAAATCCTGCTTAACAACCAATTTCTTCCTTAAAAGGCCTTCCTTCCCCAGTCTCCCTAGCCACCACAGTTCTAAAAGGAACAGTAGAGTTTTGAGCAACAATAAAAAActgaaagacaaaaaaaaataatctgcAGGGCAAGAtggatgataaaaaaaaaatggatgtgTGAAATGTATCTAAAAAAATAAGGGAAAAAAATGATACTGCCGTCAACCGTACTGCCTTCACCGCAGCATAATGACTCTAGTACAGCAAACAAATAAAGATTccttattttagttttttttttatattctctcttctcctctccctgccgCGCCTGGCAGCGGTGCACCGTCCATGGGCAGGAGAGACGAGGGGGGACCAGCAGAGGAGAAGGCCCCCCCCCAGGAGGGGCTCAGAGGTGGTGGTGGGTACAGTAATGGAGGTGGTTTCATATAGACTAGTAGTAGGTGTTGGTCTTATGGTGGTGTCCCGTAACAGCATGCTAGTTCCTGGCTGGTTTTCTCAGTCTGAATGGGTGAGGAAGGAGGTCTGAGGGGAGTGCTCCAGAGAACAGCCTGGCTCCGATACTGAACCCTGGGgaaccccctcctcctcttctagaCACCGtcgctccacctctcctctcttctcgtcTACACCAGCTGGTAGCCCGACCCGGACGTCTGGTCATACTCGATTGTGTACTGTGTGGTCCAGTCTATCGCCTTGGGCCGGATCAGGCCACAGCAGCGGATCTCAAAGAAGTCTATGAGGTTCCGTACACACCCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1957946 lncRNA upstream 23236 13724750 ~ 13725099 (+) True LOC110500963
TU1957958 lncRNA upstream 26006 13722072 ~ 13722329 (+) True G1709262
TU1957947 lncRNA upstream 31311 13714682 ~ 13717024 (+) False G1709252
TU1957948 lncRNA upstream 31311 13714682 ~ 13717024 (+) True G1709252
TU1957885 lncRNA upstream 69205 13662933 ~ 13679130 (+) False G1709194
TU1957970 lncRNA downstream 853 13752144 ~ 13752842 (+) True G1709273
TU1957988 lncRNA downstream 19392 13770683 ~ 13771339 (+) True G1709286
TU1958039 lncRNA downstream 76641 13827932 ~ 13828788 (+) True G1709320
TU1958041 lncRNA downstream 85078 13836369 ~ 13836910 (+) True G1709322
TU1958042 lncRNA downstream 85384 13836675 ~ 13837221 (+) True G1709323
XM_036956480.1 mRNA upstream 130 13739058 ~ 13748205 (+) False crp
NM_001124725.1 mRNA upstream 130 13739471 ~ 13748205 (+) False crp
XM_036956479.1 mRNA upstream 130 13739657 ~ 13748205 (+) True crp
XM_036956994.1 mRNA upstream 23198 13698517 ~ 13725137 (+) False LOC110500963
LOC118942887 mRNA upstream 516509 13231075 ~ 13231826 (+) True LOC118942887
XM_036957001.1 mRNA downstream 43688 13794979 ~ 13950432 (+) False LOC110499758
XM_036957003.1 mRNA downstream 43692 13794983 ~ 13950432 (+) False LOC110499758
XM_036956999.1 mRNA downstream 91424 13842715 ~ 13950432 (+) False LOC110499758
XM_036957000.1 mRNA downstream 91424 13842715 ~ 13950432 (+) False LOC110499758
XM_036957004.1 mRNA downstream 91524 13842815 ~ 13950432 (+) False LOC110499758
TU1957306 other upstream 646502 13099841 ~ 13101833 (+) True G1708702
TU1957288 other upstream 694366 13052533 ~ 13053969 (+) True LOC110490642
TU1957204 other upstream 795820 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 934607 12800768 ~ 12813728 (+) True LOC110490810
TU1957032 other upstream 962833 12784207 ~ 12785502 (+) True G1708495
TU1957974 other downstream 4895 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 169267 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 195354 13946645 ~ 13950916 (+) True LOC110499758
TU1958344 other downstream 314558 14065849 ~ 14066683 (+) True G1709592
TU1958620 other downstream 783092 14534383 ~ 14537036 (+) True LOC118942889

Expression Profile