RNA id: TU1958042


Basic Information

Item Value
RNA id TU1958042
length 268
lncRNA type intronic
GC content 0.47
exon number 2
gene id G1709323
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13836675 ~ 13837221 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCACTGTTAAGGTAACGCTGCTGAGAGGTAGTCACTGTTAAGGTAACACTGCTGAGAGGTTGTGACTGTTAAGGTAACGCTGCTGAGAGGTAGTCACTGTTAAGGTAACGCTGCTGAGAGGTAGTCACTGTTAAGGTAACGCTGCTGAGAGGTAGTCACTGTTAAGATAACGCTGCTGAGAGGTTGTGACTGTTAAGGGTAGGTACTCACACCAGGCAGCCCACAATAACCACTGGTCTGTTTAAAAGAAGCTGACAGGTTTAGTTT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958039 lncRNA upstream 7887 13827932 ~ 13828788 (+) True G1709320
TU1957988 lncRNA upstream 65336 13770683 ~ 13771339 (+) True G1709286
TU1957970 lncRNA upstream 83833 13752144 ~ 13752842 (+) True G1709273
TU1957964 lncRNA upstream 85384 13748335 ~ 13751291 (+) True G1709268
TU1957946 lncRNA upstream 111576 13724750 ~ 13725099 (+) True LOC110500963
TU1958055 lncRNA downstream 27817 13865038 ~ 13867304 (+) True G1709333
TU1958060 lncRNA downstream 39263 13876484 ~ 13876935 (+) True G1709337
TU1958070 lncRNA downstream 60626 13897847 ~ 13898863 (+) True G1709347
TU1958083 lncRNA downstream 98266 13935487 ~ 13935878 (+) True G1709360
TU1958084 lncRNA downstream 106497 13943718 ~ 13944313 (+) True G1709361
XM_036956480.1 mRNA upstream 88470 13739058 ~ 13748205 (+) False crp
NM_001124725.1 mRNA upstream 88470 13739471 ~ 13748205 (+) False crp
XM_036956479.1 mRNA upstream 88470 13739657 ~ 13748205 (+) True crp
XM_036956994.1 mRNA upstream 111538 13698517 ~ 13725137 (+) False LOC110500963
LOC118942887 mRNA upstream 604849 13231075 ~ 13231826 (+) True LOC118942887
XM_036956999.1 mRNA downstream 5494 13842715 ~ 13950432 (+) False LOC110499758
XM_036957000.1 mRNA downstream 5494 13842715 ~ 13950432 (+) False LOC110499758
XM_036957004.1 mRNA downstream 5594 13842815 ~ 13950432 (+) False LOC110499758
XM_036957005.1 mRNA downstream 48916 13886137 ~ 13950432 (+) False LOC110499758
XM_036957006.1 mRNA downstream 48917 13886138 ~ 13950432 (+) False LOC110499758
TU1957974 other upstream 71219 13756186 ~ 13765456 (+) True G1709276
TU1957306 other upstream 734842 13099841 ~ 13101833 (+) True G1708702
TU1957288 other upstream 782706 13052533 ~ 13053969 (+) True LOC110490642
TU1957204 other upstream 884160 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 1022947 12800768 ~ 12813728 (+) True LOC110490810
TU1958014 other downstream 83337 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 109424 13946645 ~ 13950916 (+) True LOC110499758
TU1958344 other downstream 228628 14065849 ~ 14066683 (+) True G1709592
TU1958620 other downstream 697162 14534383 ~ 14537036 (+) True LOC118942889
TU1958665 other downstream 818466 14655687 ~ 14657284 (+) True G1709824

Expression Profile