RNA id: TU1958055


Basic Information

Item Value
RNA id TU1958055
length 538
lncRNA type intronic
GC content 0.37
exon number 2
gene id G1709333
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13865038 ~ 13867304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctggactgatagggttaacacctgactatatttaattaggcatctctggactgatagggttaacgactgactttattcaatatttaattaggcatctctggactgatagggttaacacctgactatatttaattaggcatctctggactgatggggttaacacctgactatatttaatatttaatttgtcatctctggactgatagggttaacacctgactatatttaattaggcatctctggactgatagggttaacacctgactatatttaattaggcatctctggactgatagggttaacacctgactatatttaattaggcatctctggactgatagggttaacgactgactttattcaatatttaattaggcatctctggactgatagggttaacacctgactatattcaatatttaattaggcatctctggactgatagggttaacacctgactatattcaatatttaattaggcatctctggactgatggggttaacacctgactatatttaattaggcatctctggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958042 lncRNA upstream 27817 13836675 ~ 13837221 (+) True G1709323
TU1958041 lncRNA upstream 28128 13836369 ~ 13836910 (+) True G1709322
TU1958039 lncRNA upstream 36250 13827932 ~ 13828788 (+) True G1709320
TU1957988 lncRNA upstream 93699 13770683 ~ 13771339 (+) True G1709286
TU1957970 lncRNA upstream 112196 13752144 ~ 13752842 (+) True G1709273
TU1958060 lncRNA downstream 9180 13876484 ~ 13876935 (+) True G1709337
TU1958070 lncRNA downstream 30543 13897847 ~ 13898863 (+) True G1709347
TU1958083 lncRNA downstream 68183 13935487 ~ 13935878 (+) True G1709360
TU1958084 lncRNA downstream 76414 13943718 ~ 13944313 (+) True G1709361
TU1958085 lncRNA downstream 77998 13945302 ~ 13945630 (+) True G1709362
XM_036956480.1 mRNA upstream 116833 13739058 ~ 13748205 (+) False crp
NM_001124725.1 mRNA upstream 116833 13739471 ~ 13748205 (+) False crp
XM_036956479.1 mRNA upstream 116833 13739657 ~ 13748205 (+) True crp
XM_036956994.1 mRNA upstream 139901 13698517 ~ 13725137 (+) False LOC110500963
LOC118942887 mRNA upstream 633212 13231075 ~ 13231826 (+) True LOC118942887
XM_036957005.1 mRNA downstream 18833 13886137 ~ 13950432 (+) False LOC110499758
XM_036957006.1 mRNA downstream 18834 13886138 ~ 13950432 (+) False LOC110499758
XM_036957009.1 mRNA downstream 119928 13987232 ~ 14006808 (+) False LOC110516615
XM_036957007.1 mRNA downstream 119928 13987232 ~ 14006816 (+) False LOC110516615
XM_036957011.1 mRNA downstream 119928 13987232 ~ 14007450 (+) False LOC110516615
TU1957974 other upstream 99582 13756186 ~ 13765456 (+) True G1709276
TU1957306 other upstream 763205 13099841 ~ 13101833 (+) True G1708702
TU1957288 other upstream 811069 13052533 ~ 13053969 (+) True LOC110490642
TU1957204 other upstream 912523 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 1051310 12800768 ~ 12813728 (+) True LOC110490810
TU1958014 other downstream 53254 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 79341 13946645 ~ 13950916 (+) True LOC110499758
TU1958344 other downstream 198545 14065849 ~ 14066683 (+) True G1709592
TU1958620 other downstream 667079 14534383 ~ 14537036 (+) True LOC118942889
TU1958665 other downstream 788383 14655687 ~ 14657284 (+) True G1709824

Expression Profile