RNA id: TU1958060


Basic Information

Item Value
RNA id TU1958060
length 237
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1709337
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13876484 ~ 13876935 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGACTGCTTCACTGTAACAGTGGACTGCTGTACAAAGACTCACTGGAAACCTTATTGACTAGTGGACTGTAACAGTAGACTGCTTCACTGTAACAGTAGACTGCTTCACTGTAACAGTGGACTGCTTCACTGTAACAGTAGACTGCTGTACTAAGACTCACTGGAAACCTTAGAGTGCATTTTCCCTTTAAGAGCGCTACTAGATGGTTTCTCTGTGCGTTTTCCCTATAAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958055 lncRNA upstream 9180 13865038 ~ 13867304 (+) True G1709333
TU1958042 lncRNA upstream 39263 13836675 ~ 13837221 (+) True G1709323
TU1958041 lncRNA upstream 39574 13836369 ~ 13836910 (+) True G1709322
TU1958039 lncRNA upstream 47696 13827932 ~ 13828788 (+) True G1709320
TU1957988 lncRNA upstream 105145 13770683 ~ 13771339 (+) True G1709286
TU1958070 lncRNA downstream 20912 13897847 ~ 13898863 (+) True G1709347
TU1958083 lncRNA downstream 58552 13935487 ~ 13935878 (+) True G1709360
TU1958084 lncRNA downstream 66783 13943718 ~ 13944313 (+) True G1709361
TU1958085 lncRNA downstream 68367 13945302 ~ 13945630 (+) True G1709362
TU1958086 lncRNA downstream 68727 13945662 ~ 13946403 (+) True G1709363
XM_036956480.1 mRNA upstream 128279 13739058 ~ 13748205 (+) False crp
NM_001124725.1 mRNA upstream 128279 13739471 ~ 13748205 (+) False crp
XM_036956479.1 mRNA upstream 128279 13739657 ~ 13748205 (+) True crp
XM_036956994.1 mRNA upstream 151347 13698517 ~ 13725137 (+) False LOC110500963
LOC118942887 mRNA upstream 644658 13231075 ~ 13231826 (+) True LOC118942887
XM_036957005.1 mRNA downstream 9202 13886137 ~ 13950432 (+) False LOC110499758
XM_036957006.1 mRNA downstream 9203 13886138 ~ 13950432 (+) False LOC110499758
XM_036957009.1 mRNA downstream 110297 13987232 ~ 14006808 (+) False LOC110516615
XM_036957007.1 mRNA downstream 110297 13987232 ~ 14006816 (+) False LOC110516615
XM_036957011.1 mRNA downstream 110297 13987232 ~ 14007450 (+) False LOC110516615
TU1957974 other upstream 111028 13756186 ~ 13765456 (+) True G1709276
TU1957306 other upstream 774651 13099841 ~ 13101833 (+) True G1708702
TU1957288 other upstream 822515 13052533 ~ 13053969 (+) True LOC110490642
TU1957204 other upstream 923969 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 1062756 12800768 ~ 12813728 (+) True LOC110490810
TU1958014 other downstream 43623 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 69710 13946645 ~ 13950916 (+) True LOC110499758
TU1958344 other downstream 188914 14065849 ~ 14066683 (+) True G1709592
TU1958620 other downstream 657448 14534383 ~ 14537036 (+) True LOC118942889
TU1958665 other downstream 778752 14655687 ~ 14657284 (+) True G1709824

Expression Profile