RNA id: TU1958083


Basic Information

Item Value
RNA id TU1958083
length 392
lncRNA type intronic
GC content 0.52
exon number 1
gene id G1709360
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13935487 ~ 13935878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catctcattccttcccctcgttgactctttattcctcctccctcccctattcatcatctcattccttcccctcgttggctctttattcctcctccctcccctcatctcattccttcccctcgttggctctttattcctcctccctcccctcatcatctcattccttcccctcgttggctctttattcctcctccctcccctcatcatctcattccttcccctcgttgactctatattcctcctccctcccctcatcatctcattccttcccctcgttggctctttattcctcctccctcccctcatctcattccttcccctcgttgactctttattcctcctccctcccctcatcatctcattccttcccctcgttgactctttattcctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958070 lncRNA upstream 36624 13897847 ~ 13898863 (+) True G1709347
TU1958060 lncRNA upstream 58552 13876484 ~ 13876935 (+) True G1709337
TU1958055 lncRNA upstream 68183 13865038 ~ 13867304 (+) True G1709333
TU1958042 lncRNA upstream 98266 13836675 ~ 13837221 (+) True G1709323
TU1958041 lncRNA upstream 98577 13836369 ~ 13836910 (+) True G1709322
TU1958084 lncRNA downstream 7840 13943718 ~ 13944313 (+) True G1709361
TU1958085 lncRNA downstream 9424 13945302 ~ 13945630 (+) True G1709362
TU1958086 lncRNA downstream 9784 13945662 ~ 13946403 (+) True G1709363
TU1958008 lncRNA downstream 15255 13951133 ~ 13952185 (+) True G1709301
TU1958330 lncRNA downstream 123065 14058943 ~ 14059216 (+) True G1709580
XM_036956480.1 mRNA upstream 187282 13739058 ~ 13748205 (+) False crp
NM_001124725.1 mRNA upstream 187282 13739471 ~ 13748205 (+) False crp
XM_036956479.1 mRNA upstream 187282 13739657 ~ 13748205 (+) True crp
XM_036956994.1 mRNA upstream 210350 13698517 ~ 13725137 (+) False LOC110500963
LOC118942887 mRNA upstream 703661 13231075 ~ 13231826 (+) True LOC118942887
XM_036957009.1 mRNA downstream 51354 13987232 ~ 14006808 (+) False LOC110516615
XM_036957007.1 mRNA downstream 51354 13987232 ~ 14006816 (+) False LOC110516615
XM_036957011.1 mRNA downstream 51354 13987232 ~ 14007450 (+) False LOC110516615
XM_036957010.1 mRNA downstream 51361 13987239 ~ 14006808 (+) False LOC110516615
XM_036957008.1 mRNA downstream 51361 13987239 ~ 14006816 (+) True LOC110516615
TU1958014 other upstream 9137 13920558 ~ 13926350 (+) False LOC110499758
TU1957974 other upstream 170031 13756186 ~ 13765456 (+) True G1709276
TU1957306 other upstream 833654 13099841 ~ 13101833 (+) True G1708702
TU1957288 other upstream 881518 13052533 ~ 13053969 (+) True LOC110490642
TU1957204 other upstream 982972 12951685 ~ 12952515 (+) True G1708635
TU1958004 other downstream 10767 13946645 ~ 13950916 (+) True LOC110499758
TU1958344 other downstream 129971 14065849 ~ 14066683 (+) True G1709592
TU1958620 other downstream 598505 14534383 ~ 14537036 (+) True LOC118942889
TU1958665 other downstream 719809 14655687 ~ 14657284 (+) True G1709824
TU1958684 other downstream 743604 14679482 ~ 14682208 (+) True G1709840

Expression Profile