RNA id: TU1958346


Basic Information

Item Value
RNA id TU1958346
length 387
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1709594
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14067141 ~ 14067527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctatgatgagcttcggatgttttcactcacgagactcccagttagatagccaatgttccttttttccaaaaatattatttttgtaggcgaaatagctccgtttgttcttcacgtttggctgagaaatcggccggaaattgcagtcacgaaaacggcaaaaaatattcaaaattagctccataatatcgacagaaacatggcaaacgttgtttataatcaatcctcaaggtgtttttcaaatatctattcgataatatatccaccgggacaattggtttttcagtaggaccgattggaataatggctacctctgtattttacgcgagaatcactctgggagcatcaggtgaccagttgcgccagtttttcaacataaatgcgtaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958334 lncRNA upstream 6017 14060794 ~ 14061124 (+) True G1709584
TU1958330 lncRNA upstream 7925 14058943 ~ 14059216 (+) True G1709580
TU1958008 lncRNA upstream 114956 13951133 ~ 13952185 (+) True G1709301
TU1958086 lncRNA upstream 120738 13945662 ~ 13946403 (+) True G1709363
TU1958085 lncRNA upstream 121511 13945302 ~ 13945630 (+) True G1709362
TU1958359 lncRNA downstream 11267 14078794 ~ 14079007 (+) True G1709607
TU1958402 lncRNA downstream 57686 14125213 ~ 14127357 (+) True LOC110499766
TU1958403 lncRNA downstream 60494 14128021 ~ 14219097 (+) True G1709634
TU1958416 lncRNA downstream 68003 14135530 ~ 14212814 (+) True G1709644
TU1958421 lncRNA downstream 73945 14141472 ~ 14251606 (+) False G1709648
XR_005038535.1 mRNA upstream 48831 14017709 ~ 14018310 (+) True LOC118942888
XM_021576825.2 mRNA upstream 50898 14013772 ~ 14016243 (+) True LOC110499761
XM_036957008.1 mRNA upstream 60325 13987239 ~ 14006816 (+) True LOC110516615
XM_036957014.1 mRNA downstream 36290 14103817 ~ 14115795 (+) False LOC110500967
XM_036957013.1 mRNA downstream 36291 14103818 ~ 14115795 (+) True LOC110500967
XM_036957016.1 mRNA downstream 49019 14116546 ~ 14127586 (+) False LOC110499766
XM_036957030.1 mRNA downstream 214525 14282052 ~ 14288120 (+) True LOC110499776
XM_036957031.1 mRNA downstream 228440 14295967 ~ 14374190 (+) False LOC110499784
TU1958344 other upstream 458 14065849 ~ 14066683 (+) True G1709592
TU1958004 other upstream 116225 13946645 ~ 13950916 (+) True LOC110499758
TU1958014 other upstream 140791 13920558 ~ 13926350 (+) False LOC110499758
TU1957974 other upstream 301685 13756186 ~ 13765456 (+) True G1709276
TU1957306 other upstream 965308 13099841 ~ 13101833 (+) True G1708702
TU1958620 other downstream 466856 14534383 ~ 14537036 (+) True LOC118942889
TU1958665 other downstream 588160 14655687 ~ 14657284 (+) True G1709824
TU1958684 other downstream 611955 14679482 ~ 14682208 (+) True G1709840
TU1959289 other downstream 1065605 15133132 ~ 15133588 (+) True G1710321
TU1959855 other downstream 1411621 15479148 ~ 15490871 (+) True LOC110499821

Expression Profile