RNA id: TU1958420


Basic Information

Item Value
RNA id TU1958420
length 635
lncRNA type read_through
GC content 0.43
exon number 2
gene id G1709648
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14141472 ~ 14251606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGGTTTATTCATATtcacatgttagtcatttagcagacgctcttatccagagcgacatagtagtgagtgcatatattTTCCTACTTTTTGTTACTAGTCCCCTACATACAGACCTGCCAAGCAACAATAGACGCTATGTTAATTGATTTCACCATTACATGAAAAAACGAATTAGAAAATGAACCCTAAATGAAGCTATTATTTGAACCAATTTAGAAATTAAATCTTGTCAGCCACATCCCCTTTTCCCTGTTTCAGTAGCACAGGGAGGTTGGTGGTGCCTACAGTGACAGGGAGAGCAGCTCTTCTTATTCATTACTATTCATTAATAGATACAGGCACAAAGCTTGGTTCTCATGAGACAGTACAGTCTGCTTTTTCTAAGAATGTAGAAGCAGAGACACTTTCTGTTTGGATTCCCTGGGGTTCAGCAGACCTCTGGTATGATGGCACCTGCTGCAGGAACAAGTCCCAGTCCGGCCCAGTGACTGGCAACTCTGTCTGGAAGTGGTTCCAGAACCTGGACAAATAACCAAGACAGGTACAATATTAGGGTCCCGACACACCAGTTGAGAATCGTTGCTCTAGTATACAGCAATGCAATAGACTGGTAGTGGTAGATGCCTGGGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958403 lncRNA upstream 1214 14128021 ~ 14219097 (+) True G1709634
TU1958449 lncRNA upstream 3442 14205721 ~ 14216869 (+) False G1709668
TU1958450 lncRNA upstream 3442 14212961 ~ 14216869 (+) True G1709668
TU1958416 lncRNA upstream 7497 14135530 ~ 14212814 (+) True G1709644
TU1958434 lncRNA upstream 29226 14159983 ~ 14191085 (+) True G1709657
TU1958474 lncRNA downstream 15550 14267156 ~ 14267380 (+) True G1709686
TU1958476 lncRNA downstream 16730 14268336 ~ 14268661 (+) True G1709688
TU1958478 lncRNA downstream 17839 14269445 ~ 14269670 (+) True G1709690
TU1958504 lncRNA downstream 57021 14308627 ~ 14308994 (+) True G1709708
TU1958536 lncRNA downstream 138677 14390283 ~ 14391796 (+) True G1709735
XM_036957016.1 mRNA upstream 92725 14116546 ~ 14127586 (+) False LOC110499766
XM_036957014.1 mRNA upstream 104516 14103817 ~ 14115795 (+) False LOC110500967
XM_036957013.1 mRNA upstream 104516 14103818 ~ 14115795 (+) True LOC110500967
XR_005038535.1 mRNA upstream 202001 14017709 ~ 14018310 (+) True LOC118942888
XM_021576825.2 mRNA upstream 204068 14013772 ~ 14016243 (+) True LOC110499761
XM_036957030.1 mRNA downstream 30446 14282052 ~ 14288120 (+) True LOC110499776
XM_036957031.1 mRNA downstream 44361 14295967 ~ 14374190 (+) False LOC110499784
XM_036957033.1 mRNA downstream 44364 14295970 ~ 14378043 (+) True LOC110499784
XM_036957035.1 mRNA downstream 226649 14478255 ~ 14482429 (+) True LOC110499786
XM_036957036.1 mRNA downstream 236812 14488418 ~ 14493003 (+) True LOC110499788
TU1958344 other upstream 153628 14065849 ~ 14066683 (+) True G1709592
TU1958004 other upstream 269395 13946645 ~ 13950916 (+) True LOC110499758
TU1958014 other upstream 293961 13920558 ~ 13926350 (+) False LOC110499758
TU1957974 other upstream 454855 13756186 ~ 13765456 (+) True G1709276
TU1957306 other upstream 1118478 13099841 ~ 13101833 (+) True G1708702
TU1958620 other downstream 282777 14534383 ~ 14537036 (+) True LOC118942889
TU1958665 other downstream 404081 14655687 ~ 14657284 (+) True G1709824
TU1958684 other downstream 427876 14679482 ~ 14682208 (+) True G1709840
TU1959289 other downstream 881526 15133132 ~ 15133588 (+) True G1710321
TU1959855 other downstream 1227542 15479148 ~ 15490871 (+) True LOC110499821

Expression Profile