RNA id: TU1958391


Basic Information

Item Value
RNA id TU1958391
length 2558
lncRNA type read_through
GC content 0.40
exon number 4
gene id G1709632
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14148982 ~ 14257172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtctgaatactttccgaatgcactgtaagtgccttgctcaagggaacatcaaaatatttttcacatagtaagctcagggatttgaaccagcaacctttcggtaactggcccaGTGCTCTTAActgttaggctacctgccacccttatGACAGATTTGTAACATGCTATGTTCCTGCTCCACAATGTTTGTTTTGATCCTTCTCAAGTTGAGTGCAGTGTACTTAATAGTATATAGGTGAGCAGGTGTTGTAGCCATGCTCACCTCCTCATAAGGGTGCTCTCTAGTGGGCCTCTGAGTAGGGAAGGACAGATCCATGAAGTCCACCAGATAGTTGTAGCCATTGGCTATCGGAATGAAGTCCTCATCTGTCTCTATGACCTTAAATACATATTACAAACAGTTAGGCTATGTTTAGTTGGAATTCAAACAATTTGCGTTATTCACTGACCTGCAGTTATGATAAATACCAGATAACTAGAATATGAATAACCAGAATAACCAGAATCAATAAACAGAATCTAAAGAATTACCAGAATCTTAAAAGAAAGTAGCAAAAGAATGAGAAGAATTGGAAAAGATTTGTTCTAATTTCAACCCTCGAACCCACTAGATTTgggttaaaaatatttttttatttttcaaattgattgaacatgcctggcacaatggaaccaagGGTCATAGTCCCTAGAGTGTCAAGCCTGCCCATCTGGCAATCCAAGCAGCCAAAATCAGCTGTTCCAAGGGCAGTTTCCTGGacattaagcctagtcctggaacCCCCCAAAAATTCGatagagattctccattgagcttttaatttttttaaattcaggAATAGGCTTAGTCTGTGTCCGTGAGAGCGTCCGTACATGTTTTAAACATTCCAGAAATctgcagagagaggaagtgaatgGAAGGGGTCGCGTTCAGTCGGTACAAAACCTAGAAACTTTTTAAAATTGAGATTGTCCAATAATATTTAAAATTTTCCTTGCATGTTTTACTGCCTACTGAATGCGAGTCAGGAGTAACCAGGAGTGTATTCCTAAATTGCAGACTGTTGCAAAAAAGTTTAGTCCGTTTAatccaaacaaaaaacattttgcaatgaaaacaagtttctattggacaaattcaggctTCCGTTTGGTTCCAAGAGTAAACAGTAATCGGTTTCTGTTgaaaaaacgttttgcaacagtcTGCGACTAATGAATCCACCCCAGGAGTCAGCTTGTAGATGTGCAGTAGAGCACTAAGAGCTGTGAGGACTTTTATATGGACTGCAATATTTACCCGGACAACTAGATTGTAGTTTTTAAACCCTGCCCAGATGTAATAAAATTGGATCCAGCTTTTATGTTTAAATATCTCAGCGGTGATGGCCCTGTTCAGTTCATCCACGTACAAATCAAAGTCCCAACTGTCCTTATAGATGTTTGTCCCGGATGGAGGGTCGGTGATGGCTTTCCTGTGGTTATAGTCAAATCATACATGATTTACAGTGCATTTTACCTGGGTTACAACATTAAAACGGAATTCAATGATGTAGGAAAAACCGAATGTAGAAAGAGAACATAATGGCAGACAATGTAGGGAAGTGAGGTAATAATGGCAGACAATGTAGGGAAGTGAGATAATAATGGCAGACAATGTAGGGAAGTGAGGTAAAAATGGTTGACAATGTAAGGAAGTGATGCAATAATGGTAGATAATGTAGGAAAGTGATGTAATAATGGTAGACAATGTAGGGAATGATATAATAATGGCAGACAATGTAGGGAAGTGAGGTAAAAATGGTTGACAATGTAAGGAAGTGATGCAATAATGGTAGATAATGTAGGAAAGTGATGTAATAATGGTAGACAATGTAGGGAAGTGATGTAATAGAGGTTAACAATGTAGGGAAGTGAGGTAATAATGGTATTGACAACAGAGGGAAACATCAAACACTAAAATGTGATTTGTGATTATTGATGATTGTTGGCATTTCTATGGAGTATGGACTGATATgacagacatggacacacacacgatTTGCTGATTGATGAGCAATCCTACCGGCTGGGGCTCATCAGAGCCAGTGCCAGATCGAGCACAGCGCCTGGCTTGGGTGTCCATGTTGTTATGCCTGGAGCGCTCTTCTTGATCAGGGCATTGAGCTCCTCCGCTTTGTTTTTCGTGTTAGTTTCCTTAATGTACCTGTCAGTTAACTTATGTCAGTTGTCAATGTCAAATTGGGATGCAAGTTATATTGAGTGACTGCAATTGAAGCAATAAGAGGGGTCAAaacctaacctcaacctagaaCGGAATTTGTACACAAAAGAGTAAACGTTTTGTAATACCTGTCTGAGGGATGTGCTTCGACAAAGTAACCGGCAAACGGGCAGTAGATCTTGGGCTGCAAGGATTTTACCAGCTGGGTCTTGTAGTTCATGAGCTTCTTCCTTTCATTCTTGATGAAATCAGCTTTCCAGCTCTCTGCAGGGTGAAATCGACACTAGTCAATGAGTGAATCTCAGTTGTGTTTCCTTGATTCCTCGCTTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958402 lncRNA upstream 50311 14125213 ~ 14127357 (+) True LOC110499766
TU1958359 lncRNA upstream 98661 14078794 ~ 14079007 (+) True G1709607
TU1958346 lncRNA upstream 110141 14067141 ~ 14067527 (+) True G1709594
TU1958334 lncRNA upstream 116544 14060794 ~ 14061124 (+) True G1709584
TU1958330 lncRNA upstream 118452 14058943 ~ 14059216 (+) True G1709580
TU1958474 lncRNA downstream 9984 14267156 ~ 14267380 (+) True G1709686
TU1958476 lncRNA downstream 11164 14268336 ~ 14268661 (+) True G1709688
TU1958478 lncRNA downstream 12273 14269445 ~ 14269670 (+) True G1709690
TU1958504 lncRNA downstream 51455 14308627 ~ 14308994 (+) True G1709708
TU1958536 lncRNA downstream 133111 14390283 ~ 14391796 (+) True G1709735
XM_036957016.1 mRNA upstream 50082 14116546 ~ 14127586 (+) False LOC110499766
XM_036957014.1 mRNA upstream 61873 14103817 ~ 14115795 (+) False LOC110500967
XM_036957013.1 mRNA upstream 61873 14103818 ~ 14115795 (+) True LOC110500967
XR_005038535.1 mRNA upstream 159358 14017709 ~ 14018310 (+) True LOC118942888
XM_021576825.2 mRNA upstream 161425 14013772 ~ 14016243 (+) True LOC110499761
XM_036957030.1 mRNA downstream 24880 14282052 ~ 14288120 (+) True LOC110499776
XM_036957031.1 mRNA downstream 38795 14295967 ~ 14374190 (+) False LOC110499784
XM_036957033.1 mRNA downstream 38798 14295970 ~ 14378043 (+) True LOC110499784
XM_036957035.1 mRNA downstream 221083 14478255 ~ 14482429 (+) True LOC110499786
XM_036957036.1 mRNA downstream 231246 14488418 ~ 14493003 (+) True LOC110499788
TU1958344 other upstream 110985 14065849 ~ 14066683 (+) True G1709592
TU1958004 other upstream 226752 13946645 ~ 13950916 (+) True LOC110499758
TU1958014 other upstream 251318 13920558 ~ 13926350 (+) False LOC110499758
TU1957974 other upstream 412212 13756186 ~ 13765456 (+) True G1709276
TU1957306 other upstream 1075835 13099841 ~ 13101833 (+) True G1708702
TU1958620 other downstream 277211 14534383 ~ 14537036 (+) True LOC118942889
TU1958665 other downstream 398515 14655687 ~ 14657284 (+) True G1709824
TU1958684 other downstream 422310 14679482 ~ 14682208 (+) True G1709840
TU1959289 other downstream 875960 15133132 ~ 15133588 (+) True G1710321
TU1959855 other downstream 1221976 15479148 ~ 15490871 (+) True LOC110499821

Expression Profile