RNA id: TU1958504


Basic Information

Item Value
RNA id TU1958504
length 239
lncRNA type intronic
GC content 0.51
exon number 3
gene id G1709708
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14308627 ~ 14308994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCCATGACGTAGGACTGATCCATGATGTAGGACTGATCCATGATGTAGGACTGATCCATGACGTAGGACTGATCCATGACGTAGGACTGATCCATGATGTAGGACTGATCCATGACGTAGGACTGATCCATGACGGGTGACTGATCCATGACAGGTGACTGATCCACGCCTGTAACCCACGCCTCAGAGAGTAGAGGGCGTCTGCCCTGTCATGTACTGAGCTTCACAAGGCTGcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958478 lncRNA upstream 38957 14269445 ~ 14269670 (+) True G1709690
TU1958476 lncRNA upstream 39966 14268336 ~ 14268661 (+) True G1709688
TU1958474 lncRNA upstream 41247 14267156 ~ 14267380 (+) True G1709686
TU1958420 lncRNA upstream 57021 14220311 ~ 14251606 (+) True G1709648
TU1958463 lncRNA upstream 67796 14240161 ~ 14240831 (+) True G1709679
TU1958536 lncRNA downstream 81289 14390283 ~ 14391796 (+) True G1709735
TU1958545 lncRNA downstream 106473 14415467 ~ 14415743 (+) True G1709743
TU1958551 lncRNA downstream 117752 14426746 ~ 14427138 (+) True G1709749
TU1958558 lncRNA downstream 121226 14430220 ~ 14440159 (+) True G1709751
TU1958563 lncRNA downstream 121458 14430452 ~ 14434463 (+) True G1709752
XM_036957030.1 mRNA upstream 20507 14282052 ~ 14288120 (+) True LOC110499776
XM_036957016.1 mRNA upstream 181041 14116546 ~ 14127586 (+) False LOC110499766
XM_036957014.1 mRNA upstream 192832 14103817 ~ 14115795 (+) False LOC110500967
XM_036957013.1 mRNA upstream 192832 14103818 ~ 14115795 (+) True LOC110500967
XR_005038535.1 mRNA upstream 290317 14017709 ~ 14018310 (+) True LOC118942888
XM_036957035.1 mRNA downstream 169261 14478255 ~ 14482429 (+) True LOC110499786
XM_036957036.1 mRNA downstream 179424 14488418 ~ 14493003 (+) True LOC110499788
XM_021576851.2 mRNA downstream 205425 14514419 ~ 14533522 (+) False LOC110499790
XM_036957037.1 mRNA downstream 224791 14533785 ~ 14548855 (+) False LOC118942889
XM_036957046.1 mRNA downstream 240523 14549517 ~ 14565204 (+) True LOC110490791
TU1958344 other upstream 241944 14065849 ~ 14066683 (+) True G1709592
TU1958004 other upstream 357711 13946645 ~ 13950916 (+) True LOC110499758
TU1958014 other upstream 382277 13920558 ~ 13926350 (+) False LOC110499758
TU1957974 other upstream 543171 13756186 ~ 13765456 (+) True G1709276
TU1957306 other upstream 1206794 13099841 ~ 13101833 (+) True G1708702
TU1958620 other downstream 225389 14534383 ~ 14537036 (+) True LOC118942889
TU1958665 other downstream 346693 14655687 ~ 14657284 (+) True G1709824
TU1958684 other downstream 370488 14679482 ~ 14682208 (+) True G1709840
TU1959289 other downstream 824138 15133132 ~ 15133588 (+) True G1710321
TU1959855 other downstream 1170154 15479148 ~ 15490871 (+) True LOC110499821

Expression Profile