RNA id: TU1958623


Basic Information

Item Value
RNA id TU1958623
length 278
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G1709789
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14618613 ~ 14626027 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGGGGGTATGGTTTTGGATGGCCAAATAGCTAACTACAATGACATGCTGCCATGTGGAGAATcgtaggtggctcgtttcagctagttccatcttgttcttgataccatgtcttgtaatgaggtgttttgactgtcaCCTCTATGCTAATTTGGCAAAAATTCGCTAGCTAGCAAACCAACTGTAACAAAGTGTTTGAGACAAATGctcattttgcaaatgtatttgttttcaataaacaatagaggctttatttgtattttatttttacatagAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958641 lncRNA upstream 44615 14572542 ~ 14573998 (+) True G1709804
TU1958643 lncRNA upstream 47538 14570446 ~ 14571075 (+) False G1709806
TU1958644 lncRNA upstream 47538 14570446 ~ 14571075 (+) True G1709806
TU1958636 lncRNA upstream 50768 14565702 ~ 14567845 (+) True G1709800
TU1958616 lncRNA upstream 85437 14532924 ~ 14533176 (+) True LOC110499790
TU1958595 lncRNA downstream 3318 14629345 ~ 14630407 (+) False LOC110490612
TU1958596 lncRNA downstream 3318 14629345 ~ 14630407 (+) False LOC110490612
TU1958597 lncRNA downstream 3318 14629345 ~ 14630407 (+) False LOC110490612
TU1958598 lncRNA downstream 3318 14629345 ~ 14630407 (+) False LOC110490612
TU1958601 lncRNA downstream 3318 14629345 ~ 14630407 (+) False LOC110490612
XM_036957051.1 mRNA upstream 21625 14587560 ~ 14596988 (+) False LOC110519829
XM_036957052.1 mRNA upstream 21625 14587568 ~ 14596988 (+) True LOC110519829
XM_036957046.1 mRNA upstream 53409 14549517 ~ 14565204 (+) True LOC110490791
XM_036957037.1 mRNA upstream 69758 14533785 ~ 14548855 (+) False LOC118942889
XM_021576851.2 mRNA upstream 85091 14514419 ~ 14533522 (+) False LOC110499790
XR_005038537.1 mRNA downstream 721413 15347440 ~ 15348708 (+) False LOC118942891
XM_036957071.1 mRNA downstream 836517 15462544 ~ 15700037 (+) False LOC110499821
XM_036957074.1 mRNA downstream 1074592 15700619 ~ 15737550 (+) False LOC110500994
XM_036957072.1 mRNA downstream 1074593 15700620 ~ 15737550 (+) False LOC110500994
XM_036957075.1 mRNA downstream 1074600 15700627 ~ 15737550 (+) False LOC110500994
TU1958620 other upstream 81577 14534383 ~ 14537036 (+) True LOC118942889
TU1958344 other upstream 551930 14065849 ~ 14066683 (+) True G1709592
TU1958004 other upstream 667697 13946645 ~ 13950916 (+) True LOC110499758
TU1958014 other upstream 692263 13920558 ~ 13926350 (+) False LOC110499758
TU1957974 other upstream 853157 13756186 ~ 13765456 (+) True G1709276
TU1958665 other downstream 29660 14655687 ~ 14657284 (+) True G1709824
TU1958684 other downstream 53455 14679482 ~ 14682208 (+) True G1709840
TU1959289 other downstream 507105 15133132 ~ 15133588 (+) True G1710321
TU1959855 other downstream 853121 15479148 ~ 15490871 (+) True LOC110499821
TU1959941 other downstream 1096501 15722528 ~ 15737477 (+) True LOC110500994

Expression Profile