RNA id: TU1958665


Basic Information

Item Value
RNA id TU1958665
length 1389
RNA type TUCP
GC content 0.43
exon number 2
gene id G1709824
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14655687 ~ 14657284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTAGTCACTTTATTGGGCGATCACATGGACTGCATGCTTGGTGTAATTCAGTCACCTAATGGATTTCCTAAATCATTCATTCTACGGAGAGGATTCTCTGTAGTGAGCTGAATTTATTCATATATCAGACCAGACCAATGCACACATATTCTGTACAAATACAAAAGTCATAGAATGCTCTGTGGTATACAGTACGGCCCCCCTCCATTTATAAAACGATTTAGAATACGTTCCTACCACTGACATCAAAAGGAACGTTtttgttaaaaaaatacaaaaagacTCAAGGGACAGCTACTCATGCATTGGAGAAACCAGTTGTGATATTCTCTGGAGTCAAAATGGCTGCCTAGACAGGTCATCAAAAAAATACCGTACTAATAAATCCTGAGTCTTCACAaatcccagtgtgtgtgtgtggagtggacTACAGTACAATAAACCACACAACAACAGGTAACATATTTCAGAAGTAATGTTTCATTGGAATCATTCTAGGCAGTGAAGGTTCTTACAGTGGACAGTTGATAATTGGGATGCTTCGTAGACATCCAGGGTACAAGAAGAACATTGACTAATATAGCAGGGGGTGGAATTAGTGGAAAGGTTCCTGGGTTTCGGCACAACCTGATTGCATATGAAGTCCATGACAACAGAGCAGAGAGTGATTGTGATTTGGTAACCGCATTCTATAACAAACATGGAATAACACTCACATAGACACAGTACCAAAACGTCATTAATGGGACTGTGATATAGGTTCAGAATGAAAGGTGAATTGGTGGTGGTGGCGTCCCCCTTGGCTTTTTGGTTATTCTTTAAGTAAATGTTAAGGTGTGCAgaaataaatactaaatactcTAACCCATGTCACACAATGCTCAACATCAAAGCTAAAAAAGGACattcaaacaaaaaaacacatctactatatacacacacacacatagtaaacAATGCATTGATAAATCCGTCACTTTATATTCCCCTGCAGatgtacataaaaaatatatatttttacattgtacaGAGCGCAGCATGTGGaaaccatagagaatgatagaggcctctactGGCCAAAAGGCTGTAttagcatgggcacagatacaaagatgagccctctatctatctctatggtgaAAACGGACTATCTCTCCCTCAGCTCCCGGCGGCGGCCATTTTGGGACTTTGTTCCAGTGGAACACACCTGCCAAGGGAGGATTCAgtgtcactgctccagagtcactACCTCTACCGCCTGGCCGTCCAGTGTGACCGTGTTGTCGATGCGTGTGGCCACAGGCGCCATGGCCACTTGTACGGGCCGGTTCCCCTGGGCTAGGCTGGTAACCACCGTCTGGTACATGCTGACTGGGATCTGCAcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958606 lncRNA upstream 24402 14629345 ~ 14631285 (+) False LOC110490612
TU1958595 lncRNA upstream 25280 14629345 ~ 14630407 (+) False LOC110490612
TU1958596 lncRNA upstream 25280 14629345 ~ 14630407 (+) False LOC110490612
TU1958597 lncRNA upstream 25280 14629345 ~ 14630407 (+) False LOC110490612
TU1958598 lncRNA upstream 25280 14629345 ~ 14630407 (+) False LOC110490612
TU1958686 lncRNA downstream 25532 14682816 ~ 14683538 (+) False G1709842
TU1958687 lncRNA downstream 25532 14682816 ~ 14683538 (+) True G1709842
TU1959041 lncRNA downstream 39044 14696328 ~ 14696991 (+) True G1710104
TU1959042 lncRNA downstream 41713 14698997 ~ 14699235 (+) True G1710105
TU1959057 lncRNA downstream 63838 14721122 ~ 14730114 (+) True G1710120
XM_036957053.1 mRNA upstream 24402 14600080 ~ 14631285 (+) False LOC110490612
XM_036957054.1 mRNA upstream 24402 14600080 ~ 14631285 (+) False LOC110490612
XM_036957051.1 mRNA upstream 58699 14587560 ~ 14596988 (+) False LOC110519829
XM_036957052.1 mRNA upstream 58699 14587568 ~ 14596988 (+) True LOC110519829
XM_036957046.1 mRNA upstream 90483 14549517 ~ 14565204 (+) True LOC110490791
XR_005038537.1 mRNA downstream 690156 15347440 ~ 15348708 (+) False LOC118942891
XM_036957071.1 mRNA downstream 805260 15462544 ~ 15700037 (+) False LOC110499821
XM_036957074.1 mRNA downstream 1043335 15700619 ~ 15737550 (+) False LOC110500994
XM_036957072.1 mRNA downstream 1043336 15700620 ~ 15737550 (+) False LOC110500994
XM_036957075.1 mRNA downstream 1043343 15700627 ~ 15737550 (+) False LOC110500994
TU1958620 other upstream 118651 14534383 ~ 14537036 (+) True LOC118942889
TU1958344 other upstream 589004 14065849 ~ 14066683 (+) True G1709592
TU1958004 other upstream 704771 13946645 ~ 13950916 (+) True LOC110499758
TU1958014 other upstream 729337 13920558 ~ 13926350 (+) False LOC110499758
TU1957974 other upstream 890231 13756186 ~ 13765456 (+) True G1709276
TU1958684 other downstream 22198 14679482 ~ 14682208 (+) True G1709840
TU1959289 other downstream 475848 15133132 ~ 15133588 (+) True G1710321
TU1959855 other downstream 821864 15479148 ~ 15490871 (+) True LOC110499821
TU1959941 other downstream 1065244 15722528 ~ 15737477 (+) True LOC110500994
TU1960069 other downstream 1273814 15931098 ~ 15936421 (+) True G1710901

Expression Profile