RNA id: TU1958686



Basic Information


Item Value
RNA id TU1958686
length 303
lncRNA type intronic
GC content 0.47
exon number 2
gene id G1709842
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14682816 ~ 14683538 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTAagagaggttagtggtgtttgagcctgttgttggGACTGGcctgtttcacatgattcttgTGTAGgtggtaaaagaggttagtggtgtttgagcctgttgttggGACTGGcctgtttcacatgattcttgcgtaggtggtaagagaggttagtggtgtttgagcctgttgttggGACTGGcctgtttcacatgattcttgTGTAGGTGGTAatagaggttagtggtgtttgagcctgttgttggGACTGGcctgtttcacatgattcttgcgtaggtggtaatagaggttagtggtgttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1958606 lncRNA upstream 51531 14629345 ~ 14631285 (+) False LOC110490612
TU1958595 lncRNA upstream 52409 14629345 ~ 14630407 (+) False LOC110490612
TU1958596 lncRNA upstream 52409 14629345 ~ 14630407 (+) False LOC110490612
TU1958597 lncRNA upstream 52409 14629345 ~ 14630407 (+) False LOC110490612
TU1958598 lncRNA upstream 52409 14629345 ~ 14630407 (+) False LOC110490612
TU1959041 lncRNA downstream 12790 14696328 ~ 14696991 (+) True G1710104
TU1959042 lncRNA downstream 15459 14698997 ~ 14699235 (+) True G1710105
TU1959057 lncRNA downstream 37584 14721122 ~ 14730114 (+) True G1710120
TU1959070 lncRNA downstream 55512 14739050 ~ 14739343 (+) True G1710133
TU1959077 lncRNA downstream 65393 14748931 ~ 14749314 (+) True G1710140
XM_036957053.1 mRNA upstream 51531 14600080 ~ 14631285 (+) False LOC110490612
XM_036957054.1 mRNA upstream 51531 14600080 ~ 14631285 (+) False LOC110490612
XM_036957051.1 mRNA upstream 85828 14587560 ~ 14596988 (+) False LOC110519829
XM_036957052.1 mRNA upstream 85828 14587568 ~ 14596988 (+) True LOC110519829
XM_036957046.1 mRNA upstream 117612 14549517 ~ 14565204 (+) True LOC110490791
XR_005038537.1 mRNA downstream 663902 15347440 ~ 15348708 (+) False LOC118942891
XM_036957071.1 mRNA downstream 779006 15462544 ~ 15700037 (+) False LOC110499821
XM_036957074.1 mRNA downstream 1017081 15700619 ~ 15737550 (+) False LOC110500994
XM_036957072.1 mRNA downstream 1017082 15700620 ~ 15737550 (+) False LOC110500994
XM_036957075.1 mRNA downstream 1017089 15700627 ~ 15737550 (+) False LOC110500994
TU1958684 other upstream 608 14679482 ~ 14682208 (+) True G1709840
TU1958665 other upstream 25532 14655687 ~ 14657284 (+) True G1709824
TU1958620 other upstream 145780 14534383 ~ 14537036 (+) True LOC118942889
TU1958344 other upstream 616133 14065849 ~ 14066683 (+) True G1709592
TU1958004 other upstream 731900 13946645 ~ 13950916 (+) True LOC110499758
TU1959289 other downstream 449594 15133132 ~ 15133588 (+) True G1710321
TU1959855 other downstream 795610 15479148 ~ 15490871 (+) True LOC110499821
TU1959941 other downstream 1038990 15722528 ~ 15737477 (+) True LOC110500994
TU1960069 other downstream 1247560 15931098 ~ 15936421 (+) True G1710901
TU1960217 other downstream 1842039 16525577 ~ 16528816 (+) False LOC110499847

Expression Profile