RNA id: TU1959070


Basic Information

Item Value
RNA id TU1959070
length 251
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G1710133
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14739050 ~ 14739343 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcatatgaggaaactccttcaagactgttggaaaagcattcctcatgaagctggttgagagaaggtcaagagtgtgcaaagctgtcataaacttttatggttactacatgattccatgtgttacttcatagttttgatgtcttcactattattctacaatgtagaacatagtacaaataaagaaaaacccttgaatgaataggtgtgtccaaacttttgactggtaaggtgtttgtgtgtgtgtgtgtg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1959057 lncRNA upstream 8936 14721122 ~ 14730114 (+) True G1710120
TU1959042 lncRNA upstream 39815 14698997 ~ 14699235 (+) True G1710105
TU1959041 lncRNA upstream 42059 14696328 ~ 14696991 (+) True G1710104
TU1958686 lncRNA upstream 55512 14682816 ~ 14683538 (+) False G1709842
TU1958687 lncRNA upstream 55512 14682816 ~ 14683538 (+) True G1709842
TU1959077 lncRNA downstream 9588 14748931 ~ 14749314 (+) True G1710140
TU1959167 lncRNA downstream 129164 14868507 ~ 14868924 (+) True G1710212
TU1959182 lncRNA downstream 160971 14900314 ~ 14907359 (+) True G1710223
TU1959187 lncRNA downstream 179736 14919079 ~ 14919688 (+) True G1710228
TU1959192 lncRNA downstream 185990 14925333 ~ 14926403 (+) True G1710232
XM_036957053.1 mRNA upstream 107765 14600080 ~ 14631285 (+) False LOC110490612
XM_036957054.1 mRNA upstream 107765 14600080 ~ 14631285 (+) False LOC110490612
XM_036957051.1 mRNA upstream 142062 14587560 ~ 14596988 (+) False LOC110519829
XM_036957052.1 mRNA upstream 142062 14587568 ~ 14596988 (+) True LOC110519829
XM_036957046.1 mRNA upstream 173846 14549517 ~ 14565204 (+) True LOC110490791
XR_005038537.1 mRNA downstream 608097 15347440 ~ 15348708 (+) False LOC118942891
XM_036957071.1 mRNA downstream 723201 15462544 ~ 15700037 (+) False LOC110499821
XM_036957074.1 mRNA downstream 961276 15700619 ~ 15737550 (+) False LOC110500994
XM_036957072.1 mRNA downstream 961277 15700620 ~ 15737550 (+) False LOC110500994
XM_036957075.1 mRNA downstream 961284 15700627 ~ 15737550 (+) False LOC110500994
TU1958684 other upstream 56842 14679482 ~ 14682208 (+) True G1709840
TU1958665 other upstream 81766 14655687 ~ 14657284 (+) True G1709824
TU1958620 other upstream 202014 14534383 ~ 14537036 (+) True LOC118942889
TU1958344 other upstream 672367 14065849 ~ 14066683 (+) True G1709592
TU1958004 other upstream 788134 13946645 ~ 13950916 (+) True LOC110499758
TU1959289 other downstream 393789 15133132 ~ 15133588 (+) True G1710321
TU1959855 other downstream 739805 15479148 ~ 15490871 (+) True LOC110499821
TU1959941 other downstream 983185 15722528 ~ 15737477 (+) True LOC110500994
TU1960069 other downstream 1191755 15931098 ~ 15936421 (+) True G1710901
TU1960217 other downstream 1786234 16525577 ~ 16528816 (+) False LOC110499847

Expression Profile