RNA id: TU1959207



Basic Information


Item Value
RNA id TU1959207
length 699
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1710247
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14946746 ~ 14947444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagagagagcatgttcgGCTCACTTGGCAATTGTGTGTCTAAAATTAACATCCTATCAACTCAGGTGAATGGCTGAGTAAAAATAGTCAGTTGCTgatggagatgagaggagagaatggagacagagagacagagtgtccTGATGAAGtgatgtgtctgtgttgatgggtagagtctacagtcctaatgaagttctgtgttgatgggtagagtctacagtcctgatgaagttatgtgtctgtgttgatgggtagagtctacagtcctaatgaagttctgtgttgatgggtagagtctacagtcctgatgaagttatgtgtctgtgttgatgggtagagtctacagtcctaatgaagttctgtgttgatgggtagagtctacagtgctgatgaagttatgtgtctgtgtgttgatgggtagagtctacagtcctaatgaagttatgtgttgatgggtagagtctacagtcctaatgaagttctgtgttgatgggtagagtctacagtcctaatgaagttctgtgttgatgggtagagtctacagtcctaatgaagttctgtgttgatgggtagagtctacagtcctaatgaagttctgtgttgatgggtagagtctacagtcctaatgaagttctgtgttgatgggtagagtctacagtgctgatgaagttctgtgcctgtgttgatgggtagagtctac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1959206 lncRNA upstream 1326 14945138 ~ 14945420 (+) True G1710246
TU1959192 lncRNA upstream 20343 14925333 ~ 14926403 (+) True G1710232
TU1959187 lncRNA upstream 27058 14919079 ~ 14919688 (+) True G1710228
TU1959182 lncRNA upstream 39387 14900314 ~ 14907359 (+) True G1710223
TU1959167 lncRNA upstream 77822 14868507 ~ 14868924 (+) True G1710212
TU1959208 lncRNA downstream 235 14947679 ~ 14948264 (+) True G1710248
TU1959210 lncRNA downstream 1639 14949083 ~ 14949653 (+) True G1710250
TU1959211 lncRNA downstream 12338 14959782 ~ 14960229 (+) True G1710251
TU1959212 lncRNA downstream 18438 14965882 ~ 14966152 (+) True G1710252
TU1959214 lncRNA downstream 26925 14974369 ~ 14974643 (+) True G1710254
XM_036957053.1 mRNA upstream 315461 14600080 ~ 14631285 (+) False LOC110490612
XM_036957054.1 mRNA upstream 315461 14600080 ~ 14631285 (+) False LOC110490612
XM_036957051.1 mRNA upstream 349758 14587560 ~ 14596988 (+) False LOC110519829
XM_036957052.1 mRNA upstream 349758 14587568 ~ 14596988 (+) True LOC110519829
XM_036957046.1 mRNA upstream 381542 14549517 ~ 14565204 (+) True LOC110490791
XR_005038537.1 mRNA downstream 399996 15347440 ~ 15348708 (+) False LOC118942891
XM_036957071.1 mRNA downstream 515100 15462544 ~ 15700037 (+) False LOC110499821
XM_036957074.1 mRNA downstream 753175 15700619 ~ 15737550 (+) False LOC110500994
XM_036957072.1 mRNA downstream 753176 15700620 ~ 15737550 (+) False LOC110500994
XM_036957075.1 mRNA downstream 753183 15700627 ~ 15737550 (+) False LOC110500994
TU1958684 other upstream 264538 14679482 ~ 14682208 (+) True G1709840
TU1958665 other upstream 289462 14655687 ~ 14657284 (+) True G1709824
TU1958620 other upstream 409710 14534383 ~ 14537036 (+) True LOC118942889
TU1958344 other upstream 880063 14065849 ~ 14066683 (+) True G1709592
TU1958004 other upstream 995830 13946645 ~ 13950916 (+) True LOC110499758
TU1959289 other downstream 185688 15133132 ~ 15133588 (+) True G1710321
TU1959855 other downstream 531704 15479148 ~ 15490871 (+) True LOC110499821
TU1959941 other downstream 775084 15722528 ~ 15737477 (+) True LOC110500994
TU1960069 other downstream 983654 15931098 ~ 15936421 (+) True G1710901
TU1960217 other downstream 1578133 16525577 ~ 16528816 (+) False LOC110499847

Expression Profile