RNA id: TCONS_00004841


Basic Information

Item Value
RNA id TCONS_00004841
length 861
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_002599
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8265972 ~ 8295342 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAGTTGTATTGGGGAAAATACAGCACTCTGTTAacctttgttttgtttctctcACTGCTTTTTTTGCTAGTTGGACTCCCATTTGCAATACTCACAATACAACACAAATCATTCAAACGTGGATTTTTCTGTAACGATGACTCGATCAAGTACCCATATAAAGAGGACACCATATCCTATCAGTTATTAGGAGGAGTTATGATCCCTGTCACTTTGCTTACTATGATCATAGGCGAGTGCCTTTCAGTATACCTAAACCGCATCAAATCAAACTCTTTCTGCAACGGTTATGTGGCCTGTGTCTATAAGGCCATTGGCACTTTTGTGTTTGGTGCCGCCATAAGCCAATCACTCACTGACATTGCCAAGTATTCCATTGGCCGACTGCGGCCGCACTTCCTGGATGTGTGCAAACCAGATTGGTCGAAGATCAACTGCACTGCAGGGGCTTACATTGAAGACTTTGTCTGCACTGGGAAAGAAAGCGTGGTCAATGAGGGGCGactttcATTCTATTCAGGCCACTCCTCGTTCTCCATGTACTGCATGTTGTTCCTGGCACTTTACCTTCAAGCAAGAATGCAAGCTGAATGGGCACGGCTCCTTCGCCCCACACTCCAGTTCTTCCTGATTGCTGCTTCTGTGTATACCGGTCTGTCCCGTGTGTCAGACTACAAACACCACTGGAGTGACGTGCTCACAGGCCTCATCCAAGGAGCCATCGTGGCTTTACTAGTGGTTTTCTTTGTGTCAGACTTCTTCAAAAAGAAAGTGGAACCACAGAAAGAGACAGAGATCCCGCACACCACCTTACAAGAAACACCCACAAATGGAAATCATTACGATAACCCGAACTAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006644 phospholipid metabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008195 phosphatidate phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080225-26 Predicted to enable diacylglycerol diphosphate phosphatase activity and phosphatidate phosphatase activity. Predicted to act upstream of or within phospholipid metabolic process. Predicted to be located in apical plasma membrane and caveola. Predicted to be integral component of membrane. Is expressed in mesoderm; notochord; solid lens vesicle; somite; and vasculature. Orthologous to human PLPP1 (phospholipid phosphatase 1).

Ensembl:

ensembl_id ENSDART00000181828

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004828 lncRNA downstream 219608 8045417 ~ 8046763 (-) True XLOC_002593
TCONS_00005749 lncRNA downstream 282627 7981119 ~ 7983744 (-) True XLOC_002590
TCONS_00004822 lncRNA downstream 286376 7976969 ~ 7979995 (-) False XLOC_002589
TCONS_00004821 lncRNA downstream 286647 7976348 ~ 7979724 (-) False XLOC_002589
TCONS_00005748 lncRNA downstream 380434 7884013 ~ 7885937 (-) False XLOC_002586
TCONS_00005997 lncRNA upstream 335903 8618718 ~ 8621543 (-) False XLOC_002602
TCONS_00004846 lncRNA upstream 336034 8618849 ~ 8621273 (-) True XLOC_002602
TCONS_00005998 lncRNA upstream 356106 8638921 ~ 8657677 (-) True XLOC_002603
TCONS_00005999 lncRNA upstream 558883 8841698 ~ 8858549 (-) False XLOC_002606
TCONS_00006000 lncRNA upstream 558883 8841698 ~ 8858568 (-) True XLOC_002606
TCONS_00004838 mRNA downstream 69322 8154874 ~ 8197049 (-) True XLOC_002598
TCONS_00004837 mRNA downstream 113328 8146348 ~ 8153043 (-) True XLOC_002597
TCONS_00004835 mRNA downstream 136915 8128374 ~ 8129456 (-) False XLOC_002596
TCONS_00004836 mRNA downstream 137196 8128434 ~ 8129175 (-) True XLOC_002596
TCONS_00004834 mRNA downstream 186634 8077969 ~ 8079737 (-) True XLOC_002595
TCONS_00004844 mRNA upstream 16169 8298984 ~ 8358396 (-) True XLOC_002600
TCONS_00004845 mRNA upstream 133302 8416117 ~ 8434816 (-) True XLOC_002601
TCONS_00004847 mRNA upstream 377839 8660654 ~ 8672820 (-) True XLOC_002604
TCONS_00004849 mRNA upstream 664413 8947228 ~ 8956742 (-) False XLOC_002607
TCONS_00004850 mRNA upstream 664413 8947228 ~ 8957480 (-) False XLOC_002607
TCONS_00004819 other downstream 306533 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004811 other downstream 373687 7870627 ~ 7892684 (-) False XLOC_002585
TCONS_00004813 other downstream 374505 7881329 ~ 7891866 (-) True XLOC_002585
TCONS_00004790 other downstream 754248 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004786 other downstream 914261 7290947 ~ 7352110 (-) True XLOC_002573
TCONS_00004848 other upstream 393075 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004855 other upstream 733906 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004856 other upstream 754543 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004859 other upstream 858750 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004869 other upstream 1251967 9534782 ~ 9538326 (-) False XLOC_002618

Expression Profile

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