RNA id: TU1959216


Basic Information

Item Value
RNA id TU1959216
length 218
lncRNA type intronic
GC content 0.34
exon number 1
gene id G1710256
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14983028 ~ 14983245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttatagaattgaggatggctcaacaacattgtagttactccacaatactaacctaaatgacagagtgaaaagaaggaagcctgtacagaatacaaatattccataacatacatcctgtttgcaacaaggcactatagTAAAACTGCCAGAAAATAATTCATGTCCTGAATATGAAGTGTTATGTTTAGGTCAAATCTAACACAACAAATCACTAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1959215 lncRNA upstream 230 14982574 ~ 14982798 (+) True G1710255
TU1959214 lncRNA upstream 8385 14974369 ~ 14974643 (+) True G1710254
TU1959212 lncRNA upstream 16876 14965882 ~ 14966152 (+) True G1710252
TU1959211 lncRNA upstream 22799 14959782 ~ 14960229 (+) True G1710251
TU1959210 lncRNA upstream 33375 14949083 ~ 14949653 (+) True G1710250
TU1959221 lncRNA downstream 6058 14989303 ~ 14989514 (+) True G1710261
TU1959222 lncRNA downstream 8249 14991494 ~ 14991894 (+) True G1710262
TU1959234 lncRNA downstream 29339 15012584 ~ 15013201 (+) False G1710273
TU1959237 lncRNA downstream 29339 15012584 ~ 15013201 (+) False G1710273
TU1959240 lncRNA downstream 29339 15012584 ~ 15013201 (+) True G1710273
XM_036957053.1 mRNA upstream 351743 14600080 ~ 14631285 (+) False LOC110490612
XM_036957054.1 mRNA upstream 351743 14600080 ~ 14631285 (+) False LOC110490612
XM_036957051.1 mRNA upstream 386040 14587560 ~ 14596988 (+) False LOC110519829
XM_036957052.1 mRNA upstream 386040 14587568 ~ 14596988 (+) True LOC110519829
XM_036957046.1 mRNA upstream 417824 14549517 ~ 14565204 (+) True LOC110490791
XR_005038537.1 mRNA downstream 364195 15347440 ~ 15348708 (+) False LOC118942891
XM_036957071.1 mRNA downstream 479299 15462544 ~ 15700037 (+) False LOC110499821
XM_036957074.1 mRNA downstream 717374 15700619 ~ 15737550 (+) False LOC110500994
XM_036957072.1 mRNA downstream 717375 15700620 ~ 15737550 (+) False LOC110500994
XM_036957075.1 mRNA downstream 717382 15700627 ~ 15737550 (+) False LOC110500994
TU1958684 other upstream 300820 14679482 ~ 14682208 (+) True G1709840
TU1958665 other upstream 325744 14655687 ~ 14657284 (+) True G1709824
TU1958620 other upstream 445992 14534383 ~ 14537036 (+) True LOC118942889
TU1958344 other upstream 916345 14065849 ~ 14066683 (+) True G1709592
TU1958004 other upstream 1032112 13946645 ~ 13950916 (+) True LOC110499758
TU1959289 other downstream 149887 15133132 ~ 15133588 (+) True G1710321
TU1959855 other downstream 495903 15479148 ~ 15490871 (+) True LOC110499821
TU1959941 other downstream 739283 15722528 ~ 15737477 (+) True LOC110500994
TU1960069 other downstream 947853 15931098 ~ 15936421 (+) True G1710901
TU1960217 other downstream 1542332 16525577 ~ 16528816 (+) False LOC110499847

Expression Profile