RNA id: TU1959329


Basic Information

Item Value
RNA id TU1959329
length 281
lncRNA type antisense_over
GC content 0.55
exon number 1
gene id G1710356
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 15241545 ~ 15241825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGAAAAACAATCTCCTCGTATCTCCTAGTAGCCCTCCACAATCCCTTGTGGGAGACCACTGGGAAGTGTAATAGTATCAATGGCCGCCCGCCTACCTTCTTGATGCGCCCGCTCTTGGTGCCCACGAAGGCCAGGGAGTGGTTCTTGTAGACATAGGCGATGACCGAGGTCATCTTGTCGGTGGagtcagagaagagagggatgccCTGCACCATCTCTGACACCCCCAGCGGAGCGTTCATATCCAGGCCACAGAAGTTGTCGTCGATGGTTAAGag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1959326 lncRNA upstream 9715 15231620 ~ 15231830 (+) True G1710353
TU1959323 lncRNA upstream 20217 15220586 ~ 15221328 (+) True G1710350
TU1959319 lncRNA upstream 38219 15203026 ~ 15203326 (+) True G1710346
TU1959310 lncRNA upstream 50037 15191210 ~ 15191508 (+) True G1710341
TU1959298 lncRNA upstream 79746 15160069 ~ 15161799 (+) True G1710329
TU1959334 lncRNA downstream 19940 15261765 ~ 15262821 (+) True G1710361
TU1959316 lncRNA downstream 38122 15279947 ~ 15283240 (+) True G1710344
TU1959340 lncRNA downstream 59306 15301131 ~ 15301414 (+) True G1710367
TU1959598 lncRNA downstream 70259 15312084 ~ 15312294 (+) True G1710603
TU1959601 lncRNA downstream 72006 15313831 ~ 15314234 (+) True G1710606
XM_036957053.1 mRNA upstream 610260 14600080 ~ 14631285 (+) False LOC110490612
XM_036957054.1 mRNA upstream 610260 14600080 ~ 14631285 (+) False LOC110490612
XM_036957051.1 mRNA upstream 644557 14587560 ~ 14596988 (+) False LOC110519829
XM_036957052.1 mRNA upstream 644557 14587568 ~ 14596988 (+) True LOC110519829
XM_036957046.1 mRNA upstream 676341 14549517 ~ 14565204 (+) True LOC110490791
XR_005038537.1 mRNA downstream 105615 15347440 ~ 15348708 (+) False LOC118942891
XM_036957071.1 mRNA downstream 220719 15462544 ~ 15700037 (+) False LOC110499821
XM_036957074.1 mRNA downstream 458794 15700619 ~ 15737550 (+) False LOC110500994
XM_036957072.1 mRNA downstream 458795 15700620 ~ 15737550 (+) False LOC110500994
XM_036957075.1 mRNA downstream 458802 15700627 ~ 15737550 (+) False LOC110500994
TU1959289 other upstream 107957 15133132 ~ 15133588 (+) True G1710321
TU1958684 other upstream 559337 14679482 ~ 14682208 (+) True G1709840
TU1958665 other upstream 584261 14655687 ~ 14657284 (+) True G1709824
TU1958620 other upstream 704509 14534383 ~ 14537036 (+) True LOC118942889
TU1958344 other upstream 1174862 14065849 ~ 14066683 (+) True G1709592
TU1959855 other downstream 237323 15479148 ~ 15490871 (+) True LOC110499821
TU1959941 other downstream 480703 15722528 ~ 15737477 (+) True LOC110500994
TU1960069 other downstream 689273 15931098 ~ 15936421 (+) True G1710901
TU1960217 other downstream 1283752 16525577 ~ 16528816 (+) False LOC110499847
TU1961165 other downstream 1478095 16719920 ~ 16720470 (+) False G1711795

Expression Profile