RNA id: TU1959598


Basic Information

Item Value
RNA id TU1959598
length 211
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1710603
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 15312084 ~ 15312294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGGCCAATCAAGAACTGCAGTTGGTTTTCTGTCACTGCCCCATGCATTGTGAACCAAACCTTGATTTTTGGCGTTTCAAACCTTGACATGTAGGTGTTAGacagatacatgacattactAAGCACAATTTGAAGTTAACTGTATTTCCTTGTTTGAGATAGAGAGATAGCCAGGGTTAAGAAAATAACGCAGCAAAAACAAAACAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1959340 lncRNA upstream 10670 15301131 ~ 15301414 (+) True G1710367
TU1959316 lncRNA upstream 28844 15279947 ~ 15283240 (+) True G1710344
TU1959334 lncRNA upstream 49263 15261765 ~ 15262821 (+) True G1710361
TU1959329 lncRNA upstream 70259 15241545 ~ 15241825 (+) True G1710356
TU1959326 lncRNA upstream 80254 15231620 ~ 15231830 (+) True G1710353
TU1959601 lncRNA downstream 1537 15313831 ~ 15314234 (+) True G1710606
TU1959614 lncRNA downstream 24330 15336624 ~ 15336869 (+) True G1710619
TU1959665 lncRNA downstream 34804 15347098 ~ 15350037 (+) False LOC118942891
TU1959623 lncRNA downstream 35163 15347457 ~ 15350037 (+) False LOC118942891
TU1959626 lncRNA downstream 35163 15347457 ~ 15350037 (+) False LOC118942891
XM_036957053.1 mRNA upstream 680799 14600080 ~ 14631285 (+) False LOC110490612
XM_036957054.1 mRNA upstream 680799 14600080 ~ 14631285 (+) False LOC110490612
XM_036957051.1 mRNA upstream 715096 14587560 ~ 14596988 (+) False LOC110519829
XM_036957052.1 mRNA upstream 715096 14587568 ~ 14596988 (+) True LOC110519829
XM_036957046.1 mRNA upstream 746880 14549517 ~ 14565204 (+) True LOC110490791
XR_005038537.1 mRNA downstream 35146 15347440 ~ 15348708 (+) False LOC118942891
XM_036957071.1 mRNA downstream 150250 15462544 ~ 15700037 (+) False LOC110499821
XM_036957074.1 mRNA downstream 388325 15700619 ~ 15737550 (+) False LOC110500994
XM_036957072.1 mRNA downstream 388326 15700620 ~ 15737550 (+) False LOC110500994
XM_036957075.1 mRNA downstream 388333 15700627 ~ 15737550 (+) False LOC110500994
TU1959289 other upstream 178496 15133132 ~ 15133588 (+) True G1710321
TU1958684 other upstream 629876 14679482 ~ 14682208 (+) True G1709840
TU1958665 other upstream 654800 14655687 ~ 14657284 (+) True G1709824
TU1958620 other upstream 775048 14534383 ~ 14537036 (+) True LOC118942889
TU1958344 other upstream 1245401 14065849 ~ 14066683 (+) True G1709592
TU1959855 other downstream 166854 15479148 ~ 15490871 (+) True LOC110499821
TU1959941 other downstream 410234 15722528 ~ 15737477 (+) True LOC110500994
TU1960069 other downstream 618804 15931098 ~ 15936421 (+) True G1710901
TU1960217 other downstream 1213283 16525577 ~ 16528816 (+) False LOC110499847
TU1961165 other downstream 1407626 16719920 ~ 16720470 (+) False G1711795

Expression Profile