RNA id: TU1959856


Basic Information

Item Value
RNA id TU1959856
length 200
lncRNA type intronic
GC content 0.52
exon number 1
gene id G1710735
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 15463949 ~ 15464148 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgacccggattactggttgctgcggaaaaggaggaaggtcaaaaggggggtgagtgtaacggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagagccgcggcttttgtggagcgatgggtaacgatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1959853 lncRNA upstream 1819 15461883 ~ 15462130 (+) True G1710732
TU1959687 lncRNA upstream 106991 15347457 ~ 15356958 (+) False LOC118942891
TU1959683 lncRNA upstream 113648 15347457 ~ 15350301 (+) False LOC118942891
TU1959689 lncRNA upstream 113648 15347457 ~ 15350301 (+) False LOC118942891
TU1959700 lncRNA upstream 113648 15347457 ~ 15350301 (+) False LOC118942891
TU1959857 lncRNA downstream 1075 15465223 ~ 15465758 (+) True G1710736
TU1959911 lncRNA downstream 151472 15615620 ~ 15617131 (+) True G1710784
TU1959919 lncRNA downstream 186207 15650355 ~ 15651386 (+) True G1710792
TU1959944 lncRNA downstream 219587 15683735 ~ 15738481 (+) True G1710809
TU1959946 lncRNA downstream 220225 15684373 ~ 15684954 (+) True G1710810
XR_005038537.1 mRNA upstream 115241 15347440 ~ 15348708 (+) False LOC118942891
XM_036957053.1 mRNA upstream 832664 14600080 ~ 14631285 (+) False LOC110490612
XM_036957054.1 mRNA upstream 832664 14600080 ~ 14631285 (+) False LOC110490612
XM_036957051.1 mRNA upstream 866961 14587560 ~ 14596988 (+) False LOC110519829
XM_036957074.1 mRNA downstream 236471 15700619 ~ 15737550 (+) False LOC110500994
XM_036957072.1 mRNA downstream 236472 15700620 ~ 15737550 (+) False LOC110500994
XM_036957075.1 mRNA downstream 236479 15700627 ~ 15737550 (+) False LOC110500994
XM_036957073.1 mRNA downstream 236490 15700638 ~ 15737550 (+) False LOC110500994
XM_036957076.1 mRNA downstream 315427 15779575 ~ 15866718 (+) False col7a1l
TU1959289 other upstream 330361 15133132 ~ 15133588 (+) True G1710321
TU1958684 other upstream 781741 14679482 ~ 14682208 (+) True G1709840
TU1958665 other upstream 806665 14655687 ~ 14657284 (+) True G1709824
TU1958620 other upstream 926913 14534383 ~ 14537036 (+) True LOC118942889
TU1958344 other upstream 1397266 14065849 ~ 14066683 (+) True G1709592
TU1959855 other downstream 15000 15479148 ~ 15490871 (+) True LOC110499821
TU1959941 other downstream 258380 15722528 ~ 15737477 (+) True LOC110500994
TU1960069 other downstream 466950 15931098 ~ 15936421 (+) True G1710901
TU1960217 other downstream 1061429 16525577 ~ 16528816 (+) False LOC110499847
TU1961165 other downstream 1255772 16719920 ~ 16720470 (+) False G1711795

Expression Profile