RNA id: TU1959946


Basic Information

Item Value
RNA id TU1959946
length 460
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1710810
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 15684373 ~ 15684954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagggatggacaaggttggttagtatattgtcttacctttaggagagggagagagagggacatggttggttagtatattgtcttacctttaggagatggagggagagagagggacagggttgGTTAGTATATTGTCTTCTAGATGGACTACTAGGGAggggtatgtattgtgtgaaaaaCGTCTGTTTGTTTGAGGGGGTTGTGTCTAGAAAACTCTGTGTGTGTAACATCCAATCATAAGAGTGACAGTTGGTTTACCCTCTCTCTGACATCCAATCACACCCCCAGTGAGATACCCTGTGACCCCTGTCTCTAGCCTGTCCTGTTATCCTCCTAGCATTACATGCTAACACAGCTTCCATGATAAGCAAGTGAATCATTAGCCTTCAGAGCTAGCCCATTATTGTCTGACAGACATGGACGGTGCAGATGTCACGGGGTTGAGTGGAAACGCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1959919 lncRNA upstream 32987 15650355 ~ 15651386 (+) True G1710792
TU1959911 lncRNA upstream 67242 15615620 ~ 15617131 (+) True G1710784
TU1959857 lncRNA upstream 218615 15465223 ~ 15465758 (+) True G1710736
TU1959856 lncRNA upstream 220225 15463949 ~ 15464148 (+) True G1710735
TU1959853 lncRNA upstream 222243 15461883 ~ 15462130 (+) True G1710732
TU1959949 lncRNA downstream 7928 15692882 ~ 15694735 (+) True G1710813
TU1960044 lncRNA downstream 182692 15867646 ~ 15869320 (+) True G1710880
TU1960055 lncRNA downstream 204875 15889829 ~ 15890156 (+) True G1710890
TU1960061 lncRNA downstream 227953 15912907 ~ 15913707 (+) True G1710896
TU1960067 lncRNA downstream 246144 15931098 ~ 15932717 (+) False G1710901
XR_005038537.1 mRNA upstream 335665 15347440 ~ 15348708 (+) False LOC118942891
XM_036957053.1 mRNA upstream 1053088 14600080 ~ 14631285 (+) False LOC110490612
XM_036957054.1 mRNA upstream 1053088 14600080 ~ 14631285 (+) False LOC110490612
XM_036957051.1 mRNA upstream 1087385 14587560 ~ 14596988 (+) False LOC110519829
XM_036957074.1 mRNA downstream 15665 15700619 ~ 15737550 (+) False LOC110500994
XM_036957072.1 mRNA downstream 15666 15700620 ~ 15737550 (+) False LOC110500994
XM_036957075.1 mRNA downstream 15673 15700627 ~ 15737550 (+) False LOC110500994
XM_036957073.1 mRNA downstream 15684 15700638 ~ 15737550 (+) False LOC110500994
XM_036957076.1 mRNA downstream 94621 15779575 ~ 15866718 (+) False col7a1l
TU1959855 other upstream 193502 15479148 ~ 15490871 (+) True LOC110499821
TU1959289 other upstream 550785 15133132 ~ 15133588 (+) True G1710321
TU1958684 other upstream 1002165 14679482 ~ 14682208 (+) True G1709840
TU1958665 other upstream 1027089 14655687 ~ 14657284 (+) True G1709824
TU1958620 other upstream 1147337 14534383 ~ 14537036 (+) True LOC118942889
TU1959941 other downstream 37574 15722528 ~ 15737477 (+) True LOC110500994
TU1960069 other downstream 246144 15931098 ~ 15936421 (+) True G1710901
TU1960217 other downstream 840623 16525577 ~ 16528816 (+) False LOC110499847
TU1961165 other downstream 1034966 16719920 ~ 16720470 (+) False G1711795
TU1961166 other downstream 1034966 16719920 ~ 16720552 (+) False G1711795

Expression Profile