RNA id: TU1960264


Basic Information

Item Value
RNA id TU1960264
length 237
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1711051
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16307423 ~ 16307659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacacacacacacacactcacttctcACTGGCCTCTGGGCGTTGACGGAGAGTTTGGCCAAGTCTCAACGtcagcagtgaagaggcgactctgggatgctggccttctaggcagagttcctctgtccagtgtctgtgttcttttgcccatcttaatcttttcattttattggccagtctgagatacagatttttctttgcaactctgcctagaaggccagcatcccagagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1960259 lncRNA upstream 7538 16299141 ~ 16299885 (+) True G1711046
TU1960208 lncRNA upstream 88113 16217996 ~ 16219310 (+) True G1711008
TU1960199 lncRNA upstream 90020 16216652 ~ 16217403 (+) False G1711006
TU1960200 lncRNA upstream 90020 16216652 ~ 16217403 (+) False G1711006
TU1960203 lncRNA upstream 90020 16216652 ~ 16217403 (+) True G1711006
TU1960265 lncRNA downstream 127 16307786 ~ 16308107 (+) True G1711052
TU1960268 lncRNA downstream 5265 16312924 ~ 16313184 (+) True G1711055
TU1960333 lncRNA downstream 135938 16443597 ~ 16443813 (+) True G1711115
TU1960340 lncRNA downstream 157866 16465525 ~ 16465917 (+) True G1711121
TU1960341 lncRNA downstream 159356 16467015 ~ 16467777 (+) True G1711122
XM_036957098.1 mRNA upstream 8831 16291473 ~ 16298592 (+) False LOC110499838
XM_036957097.1 mRNA upstream 8831 16291589 ~ 16298592 (+) False LOC110499838
XM_036957096.1 mRNA upstream 8831 16291597 ~ 16298592 (+) True LOC110499838
XM_036957080.1 mRNA upstream 383632 15908444 ~ 15923791 (+) True copg2
XM_021596023.2 mRNA upstream 401749 15902931 ~ 15905674 (+) True LOC110518420
XM_036957101.1 mRNA downstream 10384 16318043 ~ 16525069 (+) False LOC110499847
XM_036957099.1 mRNA downstream 10384 16318043 ~ 16526406 (+) False LOC110499847
XM_036957100.1 mRNA downstream 10385 16318044 ~ 16525194 (+) False LOC110499847
XM_036957102.1 mRNA downstream 10901 16318560 ~ 16526406 (+) False LOC110499847
XM_036957109.1 mRNA downstream 286768 16594427 ~ 16600458 (+) False LOC110499856
TU1960069 other upstream 371002 15931098 ~ 15936421 (+) True G1710901
TU1959941 other upstream 569946 15722528 ~ 15737477 (+) True LOC110500994
TU1959855 other upstream 816552 15479148 ~ 15490871 (+) True LOC110499821
TU1959289 other upstream 1173835 15133132 ~ 15133588 (+) True G1710321
TU1958684 other upstream 1625215 14679482 ~ 14682208 (+) True G1709840
TU1960217 other downstream 217918 16525577 ~ 16528816 (+) False LOC110499847
TU1961165 other downstream 412261 16719920 ~ 16720470 (+) False G1711795
TU1961166 other downstream 412261 16719920 ~ 16720552 (+) False G1711795
TU1961163 other downstream 412296 16719955 ~ 16720470 (+) False G1711795
TU1961164 other downstream 412296 16719955 ~ 16720470 (+) True G1711795

Expression Profile