RNA id: TU1960268


Basic Information

Item Value
RNA id TU1960268
length 261
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1711055
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16312924 ~ 16313184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCTAGTAAAACTAGTTGGTTCTAATGGTATCCACGTCAAGCAAACGTCAATAGTACTGGGAGTGTTCATTTACTCCCCAAAGAAGCCAAGTATTCGATATGGTGAACTCTCCTTTCAACTAACTCTTCAGTGCTTGCATCACATGAAGCATGTGCTGGGTACTTATTATTTTGAAGAATTCCTGAAATTGAATTACAAATGTTACATTTTAAACTGGTTTCACACTGTAATTTGAGCCCAATACACAGTTTAACATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1960265 lncRNA upstream 4817 16307786 ~ 16308107 (+) True G1711052
TU1960264 lncRNA upstream 5265 16307423 ~ 16307659 (+) True G1711051
TU1960259 lncRNA upstream 13039 16299141 ~ 16299885 (+) True G1711046
TU1960208 lncRNA upstream 93614 16217996 ~ 16219310 (+) True G1711008
TU1960200 lncRNA upstream 95521 16216652 ~ 16217403 (+) False G1711006
TU1960333 lncRNA downstream 130413 16443597 ~ 16443813 (+) True G1711115
TU1960340 lncRNA downstream 152341 16465525 ~ 16465917 (+) True G1711121
TU1960341 lncRNA downstream 153831 16467015 ~ 16467777 (+) True G1711122
TU1960347 lncRNA downstream 159877 16473061 ~ 16473403 (+) True G1711126
TU1960350 lncRNA downstream 166361 16479545 ~ 16479795 (+) True G1711129
XM_036957098.1 mRNA upstream 14332 16291473 ~ 16298592 (+) False LOC110499838
XM_036957097.1 mRNA upstream 14332 16291589 ~ 16298592 (+) False LOC110499838
XM_036957096.1 mRNA upstream 14332 16291597 ~ 16298592 (+) True LOC110499838
XM_036957080.1 mRNA upstream 389133 15908444 ~ 15923791 (+) True copg2
XM_021596023.2 mRNA upstream 407250 15902931 ~ 15905674 (+) True LOC110518420
XM_036957101.1 mRNA downstream 4859 16318043 ~ 16525069 (+) False LOC110499847
XM_036957099.1 mRNA downstream 4859 16318043 ~ 16526406 (+) False LOC110499847
XM_036957100.1 mRNA downstream 4860 16318044 ~ 16525194 (+) False LOC110499847
XM_036957102.1 mRNA downstream 5376 16318560 ~ 16526406 (+) False LOC110499847
XM_036957109.1 mRNA downstream 281243 16594427 ~ 16600458 (+) False LOC110499856
TU1960069 other upstream 376503 15931098 ~ 15936421 (+) True G1710901
TU1959941 other upstream 575447 15722528 ~ 15737477 (+) True LOC110500994
TU1959855 other upstream 822053 15479148 ~ 15490871 (+) True LOC110499821
TU1959289 other upstream 1179336 15133132 ~ 15133588 (+) True G1710321
TU1958684 other upstream 1630716 14679482 ~ 14682208 (+) True G1709840
TU1960217 other downstream 212393 16525577 ~ 16528816 (+) False LOC110499847
TU1961165 other downstream 406736 16719920 ~ 16720470 (+) False G1711795
TU1961166 other downstream 406736 16719920 ~ 16720552 (+) False G1711795
TU1961163 other downstream 406771 16719955 ~ 16720470 (+) False G1711795
TU1961164 other downstream 406771 16719955 ~ 16720470 (+) True G1711795

Expression Profile