RNA id: TU1960358


Basic Information

Item Value
RNA id TU1960358
length 227
lncRNA type intronic
GC content 0.53
exon number 1
gene id G1711137
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16500356 ~ 16500582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagagagagagagagagactgggagagagagagagactgggagagagagagagactgggagagagagagagagactgggagagagagagactaggagagagagagagacagagagagagagagagactgggagagatagagagactgggagagagagagactaggagagagagagagacagagagagagagagagagagagagagagactgggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1960357 lncRNA upstream 904 16499191 ~ 16499452 (+) True G1711136
TU1960350 lncRNA upstream 20561 16479545 ~ 16479795 (+) True G1711129
TU1960347 lncRNA upstream 26953 16473061 ~ 16473403 (+) True G1711126
TU1960341 lncRNA upstream 32579 16467015 ~ 16467777 (+) True G1711122
TU1960340 lncRNA upstream 34439 16465525 ~ 16465917 (+) True G1711121
TU1960376 lncRNA downstream 23038 16523620 ~ 16524534 (+) True G1711152
TU1960218 lncRNA downstream 25993 16526575 ~ 16528816 (+) True LOC110499847
TU1960398 lncRNA downstream 78083 16578665 ~ 16578963 (+) True G1711174
TU1960363 lncRNA downstream 99968 16600550 ~ 16601602 (+) True G1711141
TU1960364 lncRNA downstream 101150 16601732 ~ 16602382 (+) True G1711142
XM_036957098.1 mRNA upstream 201764 16291473 ~ 16298592 (+) False LOC110499838
XM_036957097.1 mRNA upstream 201764 16291589 ~ 16298592 (+) False LOC110499838
XM_036957096.1 mRNA upstream 201764 16291597 ~ 16298592 (+) True LOC110499838
XM_036957080.1 mRNA upstream 576565 15908444 ~ 15923791 (+) True copg2
XM_021596023.2 mRNA upstream 594682 15902931 ~ 15905674 (+) True LOC110518420
XM_036957109.1 mRNA downstream 93845 16594427 ~ 16600458 (+) False LOC110499856
XM_036957110.1 mRNA downstream 93998 16594580 ~ 16600458 (+) True LOC110499856
XM_036957108.1 mRNA downstream 103677 16604259 ~ 16608641 (+) True LOC110499844
XM_021576924.2 mRNA downstream 239787 16740369 ~ 16742399 (+) False LOC110499863
XM_036957113.1 mRNA downstream 242213 16742795 ~ 16758777 (+) False LOC110499861
TU1960069 other upstream 563935 15931098 ~ 15936421 (+) True G1710901
TU1959941 other upstream 762879 15722528 ~ 15737477 (+) True LOC110500994
TU1959855 other upstream 1009485 15479148 ~ 15490871 (+) True LOC110499821
TU1959289 other upstream 1366768 15133132 ~ 15133588 (+) True G1710321
TU1958684 other upstream 1818148 14679482 ~ 14682208 (+) True G1709840
TU1960217 other downstream 24995 16525577 ~ 16528816 (+) False LOC110499847
TU1961165 other downstream 219338 16719920 ~ 16720470 (+) False G1711795
TU1961166 other downstream 219338 16719920 ~ 16720552 (+) False G1711795
TU1961163 other downstream 219373 16719955 ~ 16720470 (+) False G1711795
TU1961164 other downstream 219373 16719955 ~ 16720470 (+) True G1711795

Expression Profile