RNA id: TU1960398


Basic Information

Item Value
RNA id TU1960398
length 223
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1711174
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16578665 ~ 16578963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatcactccctggaacacaacaaggtAGTTAAAATCACTATCactccctggaacacaacaagGTGTGTAAAATCACTATCactccctggaacacaacaaggtgtgtaaaatcactatcactccctggaacacaacaaggtgtgtaaaatcactatcactccctggaacacaacaaggtgtgtaaaatcactatcactccctggaacacaacaaggtgagtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1960218 lncRNA upstream 49849 16526575 ~ 16528816 (+) True LOC110499847
TU1960376 lncRNA upstream 54131 16523620 ~ 16524534 (+) True G1711152
TU1960358 lncRNA upstream 78083 16500356 ~ 16500582 (+) True G1711137
TU1960357 lncRNA upstream 79213 16499191 ~ 16499452 (+) True G1711136
TU1960350 lncRNA upstream 98870 16479545 ~ 16479795 (+) True G1711129
TU1960363 lncRNA downstream 21587 16600550 ~ 16601602 (+) True G1711141
TU1960364 lncRNA downstream 22769 16601732 ~ 16602382 (+) True G1711142
TU1960416 lncRNA downstream 42498 16621461 ~ 16621761 (+) True G1711191
TU1960417 lncRNA downstream 44677 16623640 ~ 16624039 (+) True G1711192
TU1960418 lncRNA downstream 45212 16624175 ~ 16624493 (+) True G1711193
XM_036957099.1 mRNA upstream 52259 16318043 ~ 16526406 (+) False LOC110499847
XM_036957102.1 mRNA upstream 52259 16318560 ~ 16526406 (+) False LOC110499847
XM_036957100.1 mRNA upstream 53471 16318044 ~ 16525194 (+) False LOC110499847
XM_036957101.1 mRNA upstream 53596 16318043 ~ 16525069 (+) False LOC110499847
XM_036957096.1 mRNA upstream 280073 16291597 ~ 16298592 (+) True LOC110499838
XM_036957109.1 mRNA downstream 15464 16594427 ~ 16600458 (+) False LOC110499856
XM_036957110.1 mRNA downstream 15617 16594580 ~ 16600458 (+) True LOC110499856
XM_036957108.1 mRNA downstream 25296 16604259 ~ 16608641 (+) True LOC110499844
XM_021576924.2 mRNA downstream 161406 16740369 ~ 16742399 (+) False LOC110499863
XM_036957113.1 mRNA downstream 163832 16742795 ~ 16758777 (+) False LOC110499861
TU1960217 other upstream 49849 16525577 ~ 16528816 (+) False LOC110499847
TU1960069 other upstream 642244 15931098 ~ 15936421 (+) True G1710901
TU1959941 other upstream 841188 15722528 ~ 15737477 (+) True LOC110500994
TU1959855 other upstream 1087794 15479148 ~ 15490871 (+) True LOC110499821
TU1959289 other upstream 1445077 15133132 ~ 15133588 (+) True G1710321
TU1961165 other downstream 140957 16719920 ~ 16720470 (+) False G1711795
TU1961166 other downstream 140957 16719920 ~ 16720552 (+) False G1711795
TU1961163 other downstream 140992 16719955 ~ 16720470 (+) False G1711795
TU1961164 other downstream 140992 16719955 ~ 16720470 (+) True G1711795
TU1961184 other downstream 161440 16740403 ~ 16741218 (+) False LOC110499863

Expression Profile