RNA id: TU1960363


Basic Information

Item Value
RNA id TU1960363
length 1053
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1711141
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16600550 ~ 16601602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtagccaccctttgccttgatgacagctttgcacacttttggcattctctcaaccagcttcatgaggaatccttttccaaccgtcttgaaggagttcccacatatgctgagcacttgttggctgattttcctttactctgcggtccaactcatcctaaaccatctccattgggttgaggtcgggtgattgtggaggccaggttatctgctgcagcactctatcactctccttcttggtcaaatagcccttatacagtcattgtcctgttaaaaaacaaatgatcgtcccactaagcgcaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatcacagatagtgTCAACAGgaatgcacccccacaccatcacacctcctcctccatgcttcacggtgggaaccacacatgcggagatcatccgttcacctactctgtctcacaaagacacagcggttgtaaccaaaaatctaaaactcatcagaccaaaggacagatttccaccgatctaatggATACCGGTGGAATTGCTTGTGGTTTTTGCCCCAATCAagcctcttcttcttattggtgtcctttagtagtgtttttttgtgcagaaattcaaccatgaaggtctgagtctctgaaaagttgatgttgagatgtgtctgttacttaaactctgaggcatttatttgggctgcaatttctgaggctggtaactctaatgaacttatcctctgcagcataggtaactctgggtcttccattcctgtggcggtcctcatgaaagccagtttcttcatagcgcttgatggttttgcgactgcactcgaagaaactttaaaagttcttcatgtcttaaagtaatgatggactatcgtttttctttgcttatttgagctgtttatgccataatatggacttgtcacaacacaactgattgtctcaaacgagttaagaaggaatgaaataccacaaattaacttttaacaaggcacacctgttcattgaaatgcattccag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1960398 lncRNA upstream 21587 16578665 ~ 16578963 (+) True G1711174
TU1960218 lncRNA upstream 71734 16526575 ~ 16528816 (+) True LOC110499847
TU1960376 lncRNA upstream 76016 16523620 ~ 16524534 (+) True G1711152
TU1960358 lncRNA upstream 99968 16500356 ~ 16500582 (+) True G1711137
TU1960357 lncRNA upstream 101098 16499191 ~ 16499452 (+) True G1711136
TU1960364 lncRNA downstream 130 16601732 ~ 16602382 (+) True G1711142
TU1960416 lncRNA downstream 19859 16621461 ~ 16621761 (+) True G1711191
TU1960417 lncRNA downstream 22038 16623640 ~ 16624039 (+) True G1711192
TU1960418 lncRNA downstream 22573 16624175 ~ 16624493 (+) True G1711193
TU1960419 lncRNA downstream 24243 16625845 ~ 16626051 (+) True G1711194
XM_036957109.1 mRNA upstream 92 16594427 ~ 16600458 (+) False LOC110499856
XM_036957110.1 mRNA upstream 92 16594580 ~ 16600458 (+) True LOC110499856
XM_036957099.1 mRNA upstream 74144 16318043 ~ 16526406 (+) False LOC110499847
XM_036957102.1 mRNA upstream 74144 16318560 ~ 16526406 (+) False LOC110499847
XM_036957100.1 mRNA upstream 75356 16318044 ~ 16525194 (+) False LOC110499847
XM_036957108.1 mRNA downstream 2657 16604259 ~ 16608641 (+) True LOC110499844
XM_021576924.2 mRNA downstream 138767 16740369 ~ 16742399 (+) False LOC110499863
XM_036957113.1 mRNA downstream 141193 16742795 ~ 16758777 (+) False LOC110499861
XM_036957114.1 mRNA downstream 141193 16742795 ~ 16758777 (+) False LOC110499861
XM_036957115.1 mRNA downstream 141193 16742795 ~ 16758777 (+) False LOC110499861
TU1960217 other upstream 71734 16525577 ~ 16528816 (+) False LOC110499847
TU1960069 other upstream 664129 15931098 ~ 15936421 (+) True G1710901
TU1959941 other upstream 863073 15722528 ~ 15737477 (+) True LOC110500994
TU1959855 other upstream 1109679 15479148 ~ 15490871 (+) True LOC110499821
TU1959289 other upstream 1466962 15133132 ~ 15133588 (+) True G1710321
TU1961165 other downstream 118318 16719920 ~ 16720470 (+) False G1711795
TU1961166 other downstream 118318 16719920 ~ 16720552 (+) False G1711795
TU1961163 other downstream 118353 16719955 ~ 16720470 (+) False G1711795
TU1961164 other downstream 118353 16719955 ~ 16720470 (+) True G1711795
TU1961184 other downstream 138801 16740403 ~ 16741218 (+) False LOC110499863

Expression Profile