RNA id: TU1960417



Basic Information


Item Value
RNA id TU1960417
length 400
lncRNA type intronic
GC content 0.41
exon number 1
gene id G1711192
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16623640 ~ 16624039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAGTTCTTATGGTGGGGTCAAGCTACAATACACTGTTACTGTAGGAAGTCCCTACATGGAGTAGTTTAATGGTATGTGTGGCTGAATATTTTttaatgctgcataaatgatggaaatgacaggctactttgacactgacaaactgagaatctgagatAAATAAAAAGGACTTTGtgttgaatccatcaatagcctaggcctaggtgtgtggagacattGTAGGCTATAATATGAGGAGGACACtagtcctaaaaatgctttccaCTGTCACCGACTGACCCAACGATGCTCAGCTCTCTCACCGGTGATAGCCGATGCGTTCCTACCAGAAGCCGACATATCTCTCTTGctttactttgtaaaacaatatttggaagTTAATCCAATATTTTGTTAGCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1960416 lncRNA upstream 1879 16621461 ~ 16621761 (+) True G1711191
TU1960364 lncRNA upstream 21258 16601732 ~ 16602382 (+) True G1711142
TU1960363 lncRNA upstream 22038 16600550 ~ 16601602 (+) True G1711141
TU1960398 lncRNA upstream 44677 16578665 ~ 16578963 (+) True G1711174
TU1960218 lncRNA upstream 94824 16526575 ~ 16528816 (+) True LOC110499847
TU1960418 lncRNA downstream 136 16624175 ~ 16624493 (+) True G1711193
TU1960419 lncRNA downstream 1806 16625845 ~ 16626051 (+) True G1711194
TU1961190 lncRNA downstream 118122 16742161 ~ 16742407 (+) True LOC110499863
TU1961189 lncRNA downstream 134780 16758819 ~ 16759573 (+) True G1711804
TU1961193 lncRNA downstream 137395 16761434 ~ 16763632 (+) True G1711808
XM_036957108.1 mRNA upstream 14999 16604259 ~ 16608641 (+) True LOC110499844
XM_036957109.1 mRNA upstream 23182 16594427 ~ 16600458 (+) False LOC110499856
XM_036957110.1 mRNA upstream 23182 16594580 ~ 16600458 (+) True LOC110499856
XM_036957102.1 mRNA upstream 97234 16318560 ~ 16526406 (+) False LOC110499847
XM_036957100.1 mRNA upstream 98446 16318044 ~ 16525194 (+) False LOC110499847
XM_021576924.2 mRNA downstream 116330 16740369 ~ 16742399 (+) False LOC110499863
XM_036957113.1 mRNA downstream 118756 16742795 ~ 16758777 (+) False LOC110499861
XM_036957114.1 mRNA downstream 118756 16742795 ~ 16758777 (+) False LOC110499861
XM_036957115.1 mRNA downstream 118756 16742795 ~ 16758777 (+) False LOC110499861
XR_005038540.1 mRNA downstream 118756 16742795 ~ 16758777 (+) True LOC110499861
TU1960217 other upstream 94824 16525577 ~ 16528816 (+) False LOC110499847
TU1960069 other upstream 687219 15931098 ~ 15936421 (+) True G1710901
TU1959941 other upstream 886163 15722528 ~ 15737477 (+) True LOC110500994
TU1959855 other upstream 1132769 15479148 ~ 15490871 (+) True LOC110499821
TU1959289 other upstream 1490052 15133132 ~ 15133588 (+) True G1710321
TU1961165 other downstream 95881 16719920 ~ 16720470 (+) False G1711795
TU1961166 other downstream 95881 16719920 ~ 16720552 (+) False G1711795
TU1961163 other downstream 95916 16719955 ~ 16720470 (+) False G1711795
TU1961164 other downstream 95916 16719955 ~ 16720470 (+) True G1711795
TU1961184 other downstream 116364 16740403 ~ 16741218 (+) False LOC110499863

Expression Profile