RNA id: TU1961165


Basic Information

Item Value
RNA id TU1961165
length 464
RNA type TUCP
GC content 0.48
exon number 3
gene id G1711795
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16719920 ~ 16720552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTAATACAATATGGTATAGTACACCCCATAGCACAGTATGACTGGCAGAAACCAAAGAAGGCAAAAGTagagaaaacactaaacaatgaTCCCATTCCCACATCTGTACGTGACTGAGTAAGCAGTACATAATCACATTAAACCCTTGCTAAAATCATGGTCAGcaaattgaaaaaaataaaacatacaaaTGGCAGGAAATGCAGGTTGTCCCATCTCCAAGAACTCTATGATGCCATCCCAGGTGCCTTCACTCCAACAACTCCGTCCCAGGTGCCTTCACCTTCACTCCGACAACTCCGTCCCAGGTGCCTTCACTCCGACAACTCCGCCCCAGGTGCCTTCACTCCGACAACTCCGCCCCAGGTGCCTTCACTCCGACAACTCCGTCCCATGTGCCTTCACTCCGACAACTCCATCCCAGATGCCTTCACTCCGACCTAAGTGCCTTCACTCTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1960419 lncRNA upstream 93869 16625845 ~ 16626051 (+) True G1711194
TU1960418 lncRNA upstream 95427 16624175 ~ 16624493 (+) True G1711193
TU1960417 lncRNA upstream 95881 16623640 ~ 16624039 (+) True G1711192
TU1960416 lncRNA upstream 98159 16621461 ~ 16621761 (+) True G1711191
TU1960364 lncRNA upstream 117538 16601732 ~ 16602382 (+) True G1711142
TU1961190 lncRNA downstream 21691 16742161 ~ 16742407 (+) True LOC110499863
TU1961189 lncRNA downstream 38349 16758819 ~ 16759573 (+) True G1711804
TU1961193 lncRNA downstream 40964 16761434 ~ 16763632 (+) True G1711808
TU1961195 lncRNA downstream 46283 16766753 ~ 16768908 (+) True G1711809
TU1961225 lncRNA downstream 120802 16841272 ~ 16841488 (+) True G1711836
XM_036957108.1 mRNA upstream 111279 16604259 ~ 16608641 (+) True LOC110499844
XM_036957109.1 mRNA upstream 119462 16594427 ~ 16600458 (+) False LOC110499856
XM_036957110.1 mRNA upstream 119462 16594580 ~ 16600458 (+) True LOC110499856
XM_036957099.1 mRNA upstream 193514 16318043 ~ 16526406 (+) False LOC110499847
XM_036957102.1 mRNA upstream 193514 16318560 ~ 16526406 (+) False LOC110499847
XM_021576924.2 mRNA downstream 19899 16740369 ~ 16742399 (+) False LOC110499863
XM_036957113.1 mRNA downstream 22325 16742795 ~ 16758777 (+) False LOC110499861
XM_036957114.1 mRNA downstream 22325 16742795 ~ 16758777 (+) False LOC110499861
XM_036957115.1 mRNA downstream 22325 16742795 ~ 16758777 (+) False LOC110499861
XR_005038540.1 mRNA downstream 22325 16742795 ~ 16758777 (+) True LOC110499861
TU1960217 other upstream 191104 16525577 ~ 16528816 (+) False LOC110499847
TU1960069 other upstream 783499 15931098 ~ 15936421 (+) True G1710901
TU1959941 other upstream 982443 15722528 ~ 15737477 (+) True LOC110500994
TU1959855 other upstream 1229049 15479148 ~ 15490871 (+) True LOC110499821
TU1959289 other upstream 1586332 15133132 ~ 15133588 (+) True G1710321
TU1961184 other downstream 19933 16740403 ~ 16741218 (+) False LOC110499863
TU1961238 other downstream 193750 16914220 ~ 16943789 (+) False LOC110501009
TU1962172 other downstream 945810 17666280 ~ 17668586 (+) True G1712658
TU1962743 other downstream 1545225 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 1776677 18497147 ~ 18500874 (+) True G1713262

Expression Profile