RNA id: TU1961299


Basic Information

Item Value
RNA id TU1961299
length 249
lncRNA type intronic
GC content 0.44
exon number 1
gene id G1711902
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16949629 ~ 16949877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTGTTGTGACTATGGGTTACTGATAATATCCTGGGGTGACCTGTTGTTGTGACTATGGGTTACTGATAATATCCTGGGGTGACCTGTTGTTGTGACTATGGGTTAGTGATAATATCCTGGGGTGACCTGTTGTTGTGACTATGGGTTACTGATAATGTCCTGGGGTGACCTGTTGTTGTGACTATGGGTTAGTGATAATATCCTGGGGTGACCTGTTGTTGTGACTATGGGTTACTGATAATATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1961295 lncRNA upstream 4002 16945360 ~ 16945627 (+) True G1711898
TU1961252 lncRNA upstream 72925 16876194 ~ 16876704 (+) True G1711858
TU1961245 lncRNA upstream 83107 16866241 ~ 16866522 (+) True G1711851
TU1961231 lncRNA upstream 100161 16844218 ~ 16849468 (+) True G1711839
TU1961226 lncRNA upstream 107181 16842239 ~ 16842448 (+) True G1711837
TU1961301 lncRNA downstream 5580 16955457 ~ 16955694 (+) True G1711904
TU1961236 lncRNA downstream 21757 16971634 ~ 16973775 (+) True LOC110501009
TU1961305 lncRNA downstream 30291 16980168 ~ 16982189 (+) False G1711908
TU1961306 lncRNA downstream 30291 16980168 ~ 16981687 (+) True G1711908
TU1961307 lncRNA downstream 35299 16985176 ~ 16985412 (+) True G1711909
XM_036957118.1 mRNA upstream 123700 16762397 ~ 16825929 (+) False LOC110501007
XM_036957119.1 mRNA upstream 123700 16787255 ~ 16825929 (+) False LOC110501007
XM_036957120.1 mRNA upstream 123700 16787255 ~ 16825929 (+) False LOC110501007
XM_036957121.1 mRNA upstream 123700 16787416 ~ 16825929 (+) True LOC110501007
XR_005038540.1 mRNA upstream 190852 16742795 ~ 16758777 (+) True LOC110499861
XM_036957123.1 mRNA downstream 52540 17002417 ~ 17063380 (+) False LOC110516649
XM_036957125.1 mRNA downstream 52540 17002417 ~ 17063380 (+) False LOC110516649
XM_036957126.1 mRNA downstream 52540 17002417 ~ 17063380 (+) False LOC110516649
XM_036957127.1 mRNA downstream 52540 17002417 ~ 17063380 (+) False LOC110516649
XM_036957128.1 mRNA downstream 52540 17002417 ~ 17063380 (+) True LOC110516649
TU1961238 other upstream 5840 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 208411 16740403 ~ 16741218 (+) False LOC110499863
TU1961166 other upstream 229077 16719920 ~ 16720552 (+) False G1711795
TU1962172 other downstream 716403 17666280 ~ 17668586 (+) True G1712658
TU1962743 other downstream 1315818 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 1547270 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 1784914 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 2435095 19384972 ~ 19446851 (+) False G1714090

Expression Profile