RNA id: TU1961234


Basic Information

Item Value
RNA id TU1961234
length 1547
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G1711841
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 17063519 ~ 17065866 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGATTTGAAGGTGTGTAACGTGGCTTTCAGTTGAAAGGGCACACTCAGAGTGATGTCCTGCCTAGGGTCAAGGTGTGTGAGGGCTGGTTGGTTTAATGGTGACCTTTTGACCTTTGATCTTTGCCAAACATTGACCAAACACCACAGGTTCTCTCCAGCTGATTCTATGCAACATAGACTTCGTGTTGTGACTGTGTCTGAATTATCAATCTAGATTCTACAGTCTGAATTAGCGATGCATTTTAGTGGACAATGGGTTATTCTGTTTGTGTATTGTTCACATGTATAGTTTTTTTACTGCCTTCAAGTTTGGGAATGAATAAGAACATATAGCTCTTTGATTTTTATAAGTATGCTTTCACATACCGTTAAATGCAACTTTATTTATTGCACATAAGCTGTTGTTTTCATATGTTTTTTACATCATCAAATGTTAGATGTAAGGTACATAGCTAATTGGAAAGGTATTTTGTTTTCAGAAAATTATCCAATGCTTGTATTTCAACCCAGAAACTCAGTCTTCAGCCCAATGTCCcagcagactcacacacacacacagtagtgacTCTTCACATAGACTAGAATCTAAGGAGACACTTTCTTAACACCAGAGCCACGTTCCCAACAGATTCTAGCTTTTCAGTTTTTATGCACCCCCACTTTTGAATAGTTTTATTTTTCCAGTATATATGTCATTTGAAAAATGACCAAAAAAAGTTTAACAATGTAACGACTTGATGTTCTATCTAAAATGGTTCCCCACCTGAAATTGATATTTTTTGATACCAGCGTGCGTGAGTAGTTTCTTCATGCCACACCCATGCATGGCCAAGTCCTCCTGAAAGTGACCTCCCTTTCCTATGTGTGTTATCTAGCTaagatctacacacacacacacacacacacacacacagaaatgccaTCTCTTTATATCCTACCTTGTAAATACATCTATTTTTTTTCTACAAGAGGAAACCGAAAGATTTCCTTGATATCTGACATTAACGCATATGAGCAGGGGATGAGAACACAAGCAGTATGTTACTCTCTTGACATGGCAGAATACCTACAGGAGTTAGATGGAGTAAAGACCTTATAAACCTTGCCCTGACACCGGACACAACAGAGTTTTACCAGAGTATACAAACACAGACAAACCTTATTTTATCAACTCAAGTAGTTGCAGGAGAATTTAAATGTGCTCACAACAATGGATGTTGCATGTTTAGTTGGTGGTTCGTTCATACTATTTTTGTGTCCGGAAATTCTATTTAAAAAAGaaaagatagatagagagatcaAACGTTACGAGGGGAACGAAATTCTGAAGAGTAATTCTCAGATTATTTAAAGATGTAGGCTGACTGTACAAAGATTATGCTTGTAAAATCCGTCTGGTTTTCCACTTCTATGTAAACAGAAAAATCTAATGTCATGGTTTTGTGATTGTACACAGGAGGTATTGATAAATTATGCAAATTGTGCTGTAAAAACAACGGCTGTTGCCCCAAGTCTAAATATTAAATATCTGTACAAAGAAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1961333 lncRNA upstream 3276 17060707 ~ 17060974 (+) True G1711934
TU1961332 lncRNA upstream 3941 17060091 ~ 17060309 (+) True G1711933
TU1961330 lncRNA upstream 5951 17057953 ~ 17058299 (+) True G1711931
TU1961329 lncRNA upstream 6379 17057537 ~ 17057871 (+) True G1711930
TU1961328 lncRNA upstream 16115 17047871 ~ 17048135 (+) True G1711929
TU1961569 lncRNA downstream 84942 17150808 ~ 17151285 (+) True G1712107
TU1961578 lncRNA downstream 108504 17174370 ~ 17174808 (+) True G1712116
TU1961584 lncRNA downstream 114884 17180750 ~ 17183952 (+) False G1712121
TU1961585 lncRNA downstream 114884 17180750 ~ 17183952 (+) False G1712121
TU1961586 lncRNA downstream 114884 17180750 ~ 17183952 (+) True G1712121
XM_036957123.1 mRNA upstream 870 17002417 ~ 17063380 (+) False LOC110516649
XM_036957129.1 mRNA downstream 23103 17088969 ~ 17247292 (+) False LOC110499865
XM_036957130.1 mRNA downstream 23103 17088969 ~ 17247292 (+) False LOC110499865
XM_036957131.1 mRNA downstream 23103 17088969 ~ 17247292 (+) False LOC110499865
XM_036957132.1 mRNA downstream 23103 17088969 ~ 17247292 (+) True LOC110499865
XM_036957134.1 mRNA downstream 206139 17272005 ~ 17319991 (+) True LOC110501011
TU1961238 other upstream 120461 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 323032 16740403 ~ 16741218 (+) False LOC110499863
TU1961166 other upstream 343698 16719920 ~ 16720552 (+) False G1711795
TU1962172 other downstream 600414 17666280 ~ 17668586 (+) True G1712658
TU1962743 other downstream 1199829 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 1431281 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 1668925 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 2319106 19384972 ~ 19446851 (+) False G1714090

Expression Profile