RNA id: TU1961625


Basic Information

Item Value
RNA id TU1961625
length 214
lncRNA type intronic
GC content 0.33
exon number 1
gene id G1712159
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 17291026 ~ 17291239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttacccactgacaaagaaatgattggtctataattttaatggtacgtttatttgaacagtgagagacagaataacaacaacaaaaatccagaaaaacacatgtcaaaaatgttaaaaattgatttgcattttaatgagggaaacaAGTAtgtgacccctctgcaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1961620 lncRNA upstream 11879 17278906 ~ 17279147 (+) True G1712154
TU1961584 lncRNA upstream 107074 17180750 ~ 17183952 (+) False G1712121
TU1961585 lncRNA upstream 107074 17180750 ~ 17183952 (+) False G1712121
TU1961586 lncRNA upstream 107074 17180750 ~ 17183952 (+) True G1712121
TU1961578 lncRNA upstream 116218 17174370 ~ 17174808 (+) True G1712116
TU1961626 lncRNA downstream 9 17291248 ~ 17291758 (+) True G1712160
TU1961627 lncRNA downstream 1099 17292338 ~ 17292750 (+) True G1712161
TU1961639 lncRNA downstream 23423 17314662 ~ 17314943 (+) True G1712170
TU1961651 lncRNA downstream 47304 17338543 ~ 17343616 (+) True G1712182
TU1961701 lncRNA downstream 159587 17450826 ~ 17451445 (+) True G1712230
XM_036957129.1 mRNA upstream 43734 17088969 ~ 17247292 (+) False LOC110499865
XM_036957130.1 mRNA upstream 43734 17088969 ~ 17247292 (+) False LOC110499865
XM_036957131.1 mRNA upstream 43734 17088969 ~ 17247292 (+) False LOC110499865
XM_036957132.1 mRNA upstream 43734 17088969 ~ 17247292 (+) True LOC110499865
XM_036957128.1 mRNA upstream 227646 17002417 ~ 17063380 (+) True LOC110516649
XM_036957135.1 mRNA downstream 53192 17344431 ~ 17655507 (+) True LOC110499879
XM_036957138.1 mRNA downstream 853294 18144533 ~ 18203141 (+) True LOC110499878
XR_005038541.1 mRNA downstream 894107 18185346 ~ 18186325 (+) True LOC118942894
XR_002470035.2 mRNA downstream 951855 18243094 ~ 18244775 (+) False LOC110499885
XM_021576935.2 mRNA downstream 955889 18247128 ~ 18268059 (+) False si:dkey-159a18.1
TU1961238 other upstream 347237 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 549808 16740403 ~ 16741218 (+) False LOC110499863
TU1961166 other upstream 570474 16719920 ~ 16720552 (+) False G1711795
TU1962172 other downstream 375041 17666280 ~ 17668586 (+) True G1712658
TU1962743 other downstream 974456 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 1205908 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 1443552 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 2093733 19384972 ~ 19446851 (+) False G1714090

Expression Profile