RNA id: TU1961627


Basic Information

Item Value
RNA id TU1961627
length 413
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1712161
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 17292338 ~ 17292750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agattaggagcactccctttaagagtgcgctcctaatctcagcttgttacctgtataaaagacacctgggagccagaaatctttctgattgagagggggtcaaatacttatttccctcattaaaatgcaaatcaatttataacatttttgacatgcgtttttctggattttgttgttgttattctgtctctcactgttcaaataaacctaccattaaaacgATAGACTGATCATGTCTTTGTcgttacaaaatcagcaggggatcaaatacttttttccctcactgtatatatgCCCATACAACTTCACTAAACAAACCATAATCTCCCCCATTAGTCCTTCCTAGCAGTGGAATAGAATACGAGACTCCCACAGAATTCAATAGAACTCTTCAATATTTTGATGTATTTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1961626 lncRNA upstream 580 17291248 ~ 17291758 (+) True G1712160
TU1961625 lncRNA upstream 1099 17291026 ~ 17291239 (+) True G1712159
TU1961620 lncRNA upstream 13191 17278906 ~ 17279147 (+) True G1712154
TU1961584 lncRNA upstream 108386 17180750 ~ 17183952 (+) False G1712121
TU1961639 lncRNA downstream 21912 17314662 ~ 17314943 (+) True G1712170
TU1961651 lncRNA downstream 45793 17338543 ~ 17343616 (+) True G1712182
TU1961701 lncRNA downstream 158076 17450826 ~ 17451445 (+) True G1712230
TU1961609 lncRNA downstream 173126 17465876 ~ 17476207 (+) True G1712143
TU1961749 lncRNA downstream 239078 17531828 ~ 17532343 (+) True G1712277
XM_036957129.1 mRNA upstream 45046 17088969 ~ 17247292 (+) False LOC110499865
XM_036957130.1 mRNA upstream 45046 17088969 ~ 17247292 (+) False LOC110499865
XM_036957131.1 mRNA upstream 45046 17088969 ~ 17247292 (+) False LOC110499865
XM_036957132.1 mRNA upstream 45046 17088969 ~ 17247292 (+) True LOC110499865
XM_036957128.1 mRNA upstream 228958 17002417 ~ 17063380 (+) True LOC110516649
XM_036957135.1 mRNA downstream 51681 17344431 ~ 17655507 (+) True LOC110499879
XM_036957138.1 mRNA downstream 851783 18144533 ~ 18203141 (+) True LOC110499878
XR_005038541.1 mRNA downstream 892596 18185346 ~ 18186325 (+) True LOC118942894
XR_002470035.2 mRNA downstream 950344 18243094 ~ 18244775 (+) False LOC110499885
XM_021576935.2 mRNA downstream 954378 18247128 ~ 18268059 (+) False si:dkey-159a18.1
TU1961238 other upstream 348549 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 551120 16740403 ~ 16741218 (+) False LOC110499863
TU1961166 other upstream 571786 16719920 ~ 16720552 (+) False G1711795
TU1962172 other downstream 373530 17666280 ~ 17668586 (+) True G1712658
TU1962743 other downstream 972945 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 1204397 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 1442041 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 2092222 19384972 ~ 19446851 (+) False G1714090

Expression Profile