RNA id: TU1962172



Basic Information


Item Value
RNA id TU1962172
length 624
RNA type TUCP
GC content 0.38
exon number 2
gene id G1712658
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 17666280 ~ 17668586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atgtttctctctacctctacattatggtaatggctgtgttatttgactggtatgtttctctctacctctacattacggtaatggttgtgttatttgactggtatgtttctctctacctctgcattatggtaatggctgtgttatttgactgtgttatttgactggtatgtttctctctacctctgcattatggtaatggctgtgttatttgactggtatgtttctctctacctctgcattatggtaatggctgtgttatttgactggtatgtttttctctacctctgcattatggtaatggttgtgttatttgactggtatgtatctctgtacctctgcattatggtaatggttgtgttatttgactggtatgtttcgctctacctctgcattatggtaatggttgtgttatttgactggtatgtttctctctacctctgcattatggtaatggttgtgttatttgactggtatgtttctctctacctctacattatggtaatggctgtgttatttgactggtatgtttctctctacctctacattacggtaatggttgtgttatttgactggtatgtttctctctacctctgcattatggtaatggctgtgttatttgactgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1962169 lncRNA upstream 4296 17661558 ~ 17661984 (+) True G1712656
TU1961794 lncRNA upstream 50622 17615415 ~ 17615658 (+) True G1712319
TU1961783 lncRNA upstream 75565 17589555 ~ 17590715 (+) True G1712308
TU1961764 lncRNA upstream 111778 17553342 ~ 17554502 (+) True G1712289
TU1961749 lncRNA upstream 133937 17531828 ~ 17532343 (+) True G1712277
TU1962203 lncRNA downstream 11263 17679849 ~ 17680072 (+) True G1712677
TU1962229 lncRNA downstream 34513 17703099 ~ 17703329 (+) True G1712703
TU1962230 lncRNA downstream 40604 17709190 ~ 17731791 (+) True G1712704
TU1962234 lncRNA downstream 70438 17739024 ~ 17739267 (+) True G1712708
TU1962255 lncRNA downstream 84500 17753086 ~ 17753356 (+) True G1712729
XM_036957135.1 mRNA upstream 10773 17344431 ~ 17655507 (+) True LOC110499879
XM_036957134.1 mRNA upstream 346289 17272005 ~ 17319991 (+) True LOC110501011
XM_036957129.1 mRNA upstream 418988 17088969 ~ 17247292 (+) False LOC110499865
XM_036957130.1 mRNA upstream 418988 17088969 ~ 17247292 (+) False LOC110499865
XM_036957131.1 mRNA upstream 418988 17088969 ~ 17247292 (+) False LOC110499865
XM_036957138.1 mRNA downstream 475947 18144533 ~ 18203141 (+) True LOC110499878
XR_005038541.1 mRNA downstream 516760 18185346 ~ 18186325 (+) True LOC118942894
XR_002470035.2 mRNA downstream 574508 18243094 ~ 18244775 (+) False LOC110499885
XM_021576935.2 mRNA downstream 578542 18247128 ~ 18268059 (+) False si:dkey-159a18.1
XM_036957147.1 mRNA downstream 578542 18247128 ~ 18268686 (+) False si:dkey-159a18.1
TU1961238 other upstream 722491 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 925062 16740403 ~ 16741218 (+) False LOC110499863
TU1961166 other upstream 945728 16719920 ~ 16720552 (+) False G1711795
TU1961165 other upstream 945810 16719920 ~ 16720470 (+) False G1711795
TU1962743 other downstream 597109 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 828561 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 1066205 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 1716386 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 1762137 19430723 ~ 19446851 (+) False G1714090

Expression Profile