RNA id: TU1962203


Basic Information

Item Value
RNA id TU1962203
length 224
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1712677
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 17679849 ~ 17680072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTATGTAGTTCCATCTTGGTTGTTGTTTAGCCTTTATGGTCAAACAGCCTACATCTTTGTTGAGGGGGACAAAATATGTGTTCTGGACTTGAAACAAGGACCTGggtctgcatcctaaatggcacccttttccttgtatagtgcactacttttgaccagagccctatggcatgccccatgtgccctggtcaaaacaagtgcactaaatggggaaagcggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962169 lncRNA upstream 17865 17661558 ~ 17661984 (+) True G1712656
TU1961794 lncRNA upstream 64191 17615415 ~ 17615658 (+) True G1712319
TU1961783 lncRNA upstream 89134 17589555 ~ 17590715 (+) True G1712308
TU1961764 lncRNA upstream 125347 17553342 ~ 17554502 (+) True G1712289
TU1961749 lncRNA upstream 147506 17531828 ~ 17532343 (+) True G1712277
TU1962229 lncRNA downstream 23027 17703099 ~ 17703329 (+) True G1712703
TU1962230 lncRNA downstream 29118 17709190 ~ 17731791 (+) True G1712704
TU1962234 lncRNA downstream 58952 17739024 ~ 17739267 (+) True G1712708
TU1962255 lncRNA downstream 73014 17753086 ~ 17753356 (+) True G1712729
TU1962388 lncRNA downstream 223322 17903394 ~ 17907873 (+) True G1712852
XM_036957135.1 mRNA upstream 24342 17344431 ~ 17655507 (+) True LOC110499879
XM_036957134.1 mRNA upstream 359858 17272005 ~ 17319991 (+) True LOC110501011
XM_036957130.1 mRNA upstream 432557 17088969 ~ 17247292 (+) False LOC110499865
XM_036957138.1 mRNA downstream 464461 18144533 ~ 18203141 (+) True LOC110499878
XR_005038541.1 mRNA downstream 505274 18185346 ~ 18186325 (+) True LOC118942894
XR_002470035.2 mRNA downstream 563022 18243094 ~ 18244775 (+) False LOC110499885
XM_021576935.2 mRNA downstream 567056 18247128 ~ 18268059 (+) False si:dkey-159a18.1
XM_036957147.1 mRNA downstream 567056 18247128 ~ 18268686 (+) False si:dkey-159a18.1
TU1962172 other upstream 11263 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 736060 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 938631 16740403 ~ 16741218 (+) False LOC110499863
TU1961166 other upstream 959297 16719920 ~ 16720552 (+) False G1711795
TU1962743 other downstream 585623 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 817075 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 1054719 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 1704900 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 1750651 19430723 ~ 19446851 (+) False G1714090

Expression Profile