RNA id: TU1962388


Basic Information

Item Value
RNA id TU1962388
length 431
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G1712852
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 17903394 ~ 17907873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAGGAGTGGGATGCTGGGGTTCAAGGACTTCCTCTTGTTCCTGCAACATTTTAATTACGTTTGGGTGTTTAGTGAGATGCATCCTGGAGCCTCATCAAGCCATATAAACACACCCAACAACACACAAAGGCTGCAAAGGACCCCCAGAGACCAGAGGCATCAGTTTTTGTGACTGAGTCAACCAACCGGAAAGACATACGGattacacctggcgAGTCCTGTGCTTGGTCCACGGACCAGGtctccagtatgtctccccagcctggtgagtccggagcctccagcgacggtccccagtccggagccttcagcgacggtccccagtccggagcctccagcgacggtccgcaGTCCGGAGTCTCCAAACCGGAGACGCCACCGAtgtagatgcccacccagaccctcccctataatgtcaggtttgcggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962255 lncRNA upstream 150038 17753086 ~ 17753356 (+) True G1712729
TU1962234 lncRNA upstream 164127 17739024 ~ 17739267 (+) True G1712708
TU1962230 lncRNA upstream 171603 17709190 ~ 17731791 (+) True G1712704
TU1962229 lncRNA upstream 200065 17703099 ~ 17703329 (+) True G1712703
TU1962203 lncRNA upstream 223322 17679849 ~ 17680072 (+) True G1712677
TU1962414 lncRNA downstream 48111 17955984 ~ 17958013 (+) True G1712872
TU1962428 lncRNA downstream 82384 17990257 ~ 17993841 (+) True G1712885
TU1962517 lncRNA downstream 95009 18002882 ~ 18003279 (+) True G1712947
TU1962526 lncRNA downstream 100860 18008733 ~ 18009131 (+) True G1712956
TU1962531 lncRNA downstream 105768 18013641 ~ 18013847 (+) True G1712961
XM_036957135.1 mRNA upstream 247887 17344431 ~ 17655507 (+) True LOC110499879
XM_036957134.1 mRNA upstream 583403 17272005 ~ 17319991 (+) True LOC110501011
XM_036957130.1 mRNA upstream 656102 17088969 ~ 17247292 (+) False LOC110499865
XM_036957138.1 mRNA downstream 236660 18144533 ~ 18203141 (+) True LOC110499878
XR_005038541.1 mRNA downstream 277473 18185346 ~ 18186325 (+) True LOC118942894
XR_002470035.2 mRNA downstream 335221 18243094 ~ 18244775 (+) False LOC110499885
XM_021576935.2 mRNA downstream 339255 18247128 ~ 18268059 (+) False si:dkey-159a18.1
XM_036957147.1 mRNA downstream 339255 18247128 ~ 18268686 (+) False si:dkey-159a18.1
TU1962172 other upstream 234808 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 959605 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1162176 16740403 ~ 16741218 (+) False LOC110499863
TU1961163 other upstream 1182924 16719955 ~ 16720470 (+) False G1711795
TU1962743 other downstream 357822 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 589274 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 826918 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 1477099 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 1522850 19430723 ~ 19446851 (+) False G1714090

Expression Profile