RNA id: TU1962613


Basic Information

Item Value
RNA id TU1962613
length 272
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G1713043
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18079472 ~ 18079743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTACATCAGTTATGACATTACAAACAGTTATATAGCccccaaaatgtatttaaatttgttccattttttaaatgtgttttgtgAGGTTTATTTCAAGGGGAAATGCAGGAAAGACATTATTGCAACATTTCTAGATGGCCAGAGCAACAATCCCTTTAATGTTGAAATATAACCTAATGAGAACATATTCCTTTGAGGTCATGTTTGATTAAATAAGGACGTTGGAATACTGTTAAACATTAACAACCAATTTAGAACCATACAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962581 lncRNA upstream 20981 18058198 ~ 18058491 (+) True G1713011
TU1962554 lncRNA upstream 43340 18035909 ~ 18036132 (+) True G1712984
TU1962533 lncRNA upstream 64124 18014515 ~ 18015348 (+) True G1712963
TU1962532 lncRNA upstream 65019 18014212 ~ 18014453 (+) True G1712962
TU1962531 lncRNA upstream 65625 18013641 ~ 18013847 (+) True G1712961
TU1962614 lncRNA downstream 332 18080075 ~ 18083417 (+) True G1713044
TU1962626 lncRNA downstream 6838 18086581 ~ 18086905 (+) True G1713050
TU1962629 lncRNA downstream 7250 18086993 ~ 18087417 (+) False G1713051
TU1962628 lncRNA downstream 7997 18087740 ~ 18088833 (+) True G1713051
TU1962636 lncRNA downstream 15656 18095399 ~ 18095623 (+) True G1713058
XM_036957135.1 mRNA upstream 423965 17344431 ~ 17655507 (+) True LOC110499879
XM_036957134.1 mRNA upstream 759481 17272005 ~ 17319991 (+) True LOC110501011
XM_036957130.1 mRNA upstream 832180 17088969 ~ 17247292 (+) False LOC110499865
XM_036957138.1 mRNA downstream 64790 18144533 ~ 18203141 (+) True LOC110499878
XR_005038541.1 mRNA downstream 105603 18185346 ~ 18186325 (+) True LOC118942894
XR_002470035.2 mRNA downstream 163351 18243094 ~ 18244775 (+) False LOC110499885
XM_021576935.2 mRNA downstream 167385 18247128 ~ 18268059 (+) False si:dkey-159a18.1
XM_036957147.1 mRNA downstream 167385 18247128 ~ 18268686 (+) False si:dkey-159a18.1
TU1962172 other upstream 410886 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1135683 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1338254 16740403 ~ 16741218 (+) False LOC110499863
TU1961163 other upstream 1359002 16719955 ~ 16720470 (+) False G1711795
TU1962743 other downstream 185952 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 417404 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 655048 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 1305229 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 1350980 19430723 ~ 19446851 (+) False G1714090

Expression Profile