RNA id: TU1962629


Basic Information

Item Value
RNA id TU1962629
length 425
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1713051
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18086993 ~ 18088833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aataaatggaagagtcaaacatgtggtttccatacgtTTAACGTGTTTCACTCCGTTCCATCAAgtgcattccagccattacaatgagcccatcctcctatagctcatcccaccagcctcctctgtcgtATACGCTATACCTATGAGTTCCTTTCAAATATTCAGTACGtttggtatttattaggatccccattagccgctgcaaaagcatcagctactcttcttggggtccacatgaaacatgacaaaATACATAACAAAATACAGAACATTATTAGTCAAAGACTGAAATACGTACATTTAAAACATCCCACCTAACCTATATATCAGAATATACACACATCAGATGCTAAAAATTAATAATATCTGGAAGAGAATGTGTGCCGTCTGAGGGTTACACAAGCTTGGTATTCATCCAAATCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962626 lncRNA upstream 88 18086581 ~ 18086905 (+) True G1713050
TU1962614 lncRNA upstream 3576 18080075 ~ 18083417 (+) True G1713044
TU1962613 lncRNA upstream 7250 18079472 ~ 18079743 (+) True G1713043
TU1962581 lncRNA upstream 28502 18058198 ~ 18058491 (+) True G1713011
TU1962554 lncRNA upstream 50861 18035909 ~ 18036132 (+) True G1712984
TU1962628 lncRNA downstream 323 18087740 ~ 18088833 (+) True G1713051
TU1962636 lncRNA downstream 7982 18095399 ~ 18095623 (+) True G1713058
TU1962645 lncRNA downstream 12224 18099641 ~ 18099877 (+) True G1713066
TU1962647 lncRNA downstream 13611 18101028 ~ 18101259 (+) True G1713068
TU1962661 lncRNA downstream 26837 18114254 ~ 18114555 (+) True G1713081
XM_036957135.1 mRNA upstream 431486 17344431 ~ 17655507 (+) True LOC110499879
XM_036957134.1 mRNA upstream 767002 17272005 ~ 17319991 (+) True LOC110501011
XM_036957130.1 mRNA upstream 839701 17088969 ~ 17247292 (+) False LOC110499865
XM_036957138.1 mRNA downstream 57116 18144533 ~ 18203141 (+) True LOC110499878
XR_005038541.1 mRNA downstream 97929 18185346 ~ 18186325 (+) True LOC118942894
XR_002470035.2 mRNA downstream 155677 18243094 ~ 18244775 (+) False LOC110499885
XM_021576935.2 mRNA downstream 159711 18247128 ~ 18268059 (+) False si:dkey-159a18.1
XM_036957147.1 mRNA downstream 159711 18247128 ~ 18268686 (+) False si:dkey-159a18.1
TU1962172 other upstream 418407 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1143204 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1345775 16740403 ~ 16741218 (+) False LOC110499863
TU1961163 other upstream 1366523 16719955 ~ 16720470 (+) False G1711795
TU1962743 other downstream 178278 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 409730 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 647374 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 1297555 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 1343306 19430723 ~ 19446851 (+) False G1714090

Expression Profile