RNA id: TU1962847


Basic Information

Item Value
RNA id TU1962847
length 219
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1713254
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18456343 ~ 18456561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCGATGGGCTTTGTTGAAGACGGCGCGCTAGCGAACGCAAATGCTAATTTGCACTGCTATTCGTGCGCTGCCATGGTTACCGGAGGGCATCTGAAGGTCACTCGTTCGCACTTCAAGGCAGAGAGATAACACATGCATACATGCAACAGACTGGAGGATGTGGgcccacctcaacaacaacaaaaaagagggGGTTGGGAAGGATAGAAAAGGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962838 lncRNA upstream 10218 18445827 ~ 18446125 (+) True G1713245
TU1962818 lncRNA upstream 32564 18423089 ~ 18423779 (+) True G1713226
TU1962816 lncRNA upstream 38958 18416912 ~ 18417385 (+) True G1713224
TU1962780 lncRNA upstream 66615 18389359 ~ 18389728 (+) True G1713189
TU1962778 lncRNA upstream 68105 18387749 ~ 18388238 (+) True G1713187
TU1962848 lncRNA downstream 863 18457424 ~ 18457681 (+) True G1713255
TU1962863 lncRNA downstream 12135 18468696 ~ 18470203 (+) True G1713266
TU1962865 lncRNA downstream 14559 18471120 ~ 18471324 (+) True G1713267
TU1962867 lncRNA downstream 17617 18474178 ~ 18474391 (+) True G1713269
TU1962870 lncRNA downstream 22894 18479455 ~ 18479662 (+) True G1713272
XM_021576941.2 mRNA upstream 81713 18366267 ~ 18374630 (+) True LOC110499881
XM_036957148.1 mRNA upstream 166144 18270787 ~ 18290199 (+) False LOC110499882
XM_036957149.1 mRNA upstream 166144 18270987 ~ 18290199 (+) True LOC110499882
XM_021576934.2 mRNA upstream 187652 18247128 ~ 18268691 (+) False si:dkey-159a18.1
XM_036957147.1 mRNA upstream 187657 18247128 ~ 18268686 (+) False si:dkey-159a18.1
XM_036957150.1 mRNA downstream 55114 18511675 ~ 18516033 (+) True LOC110499888
XM_036956481.1 mRNA downstream 111307 18567868 ~ 18596759 (+) False LOC100301653
XM_036956482.1 mRNA downstream 111310 18567871 ~ 18596759 (+) False LOC100301653
NM_001160486.1 mRNA downstream 121004 18577565 ~ 18594851 (+) True LOC100301653
XM_021576949.2 mRNA downstream 157122 18613683 ~ 18617804 (+) False LOC110499892
TU1962743 other upstream 188835 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 787757 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1512554 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1715125 16740403 ~ 16741218 (+) False LOC110499863
TU1961164 other upstream 1735873 16719955 ~ 16720470 (+) True G1711795
TU1962859 other downstream 40586 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 278230 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 928411 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 974162 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 974260 19430821 ~ 19618485 (+) False G1714090

Expression Profile