RNA id: TU1962867


Basic Information

Item Value
RNA id TU1962867
length 214
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1713269
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18474178 ~ 18474391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaGATGTTTTTGCatacagcagtagagtagaggcacttacagaaGATGTTTTTGCatacagcagtagagtagaggcacttacagaaGATGTTTTTGCatacagcagtagagtagaggcacttacagaaGATGCTTttgcatagagcagtagagtagaggcacttacagaaGATGTTTttgcatagagcagtagagtagaggcacttacagaaGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962865 lncRNA upstream 2854 18471120 ~ 18471324 (+) True G1713267
TU1962863 lncRNA upstream 3975 18468696 ~ 18470203 (+) True G1713266
TU1962848 lncRNA upstream 16497 18457424 ~ 18457681 (+) True G1713255
TU1962847 lncRNA upstream 17617 18456343 ~ 18456561 (+) True G1713254
TU1962838 lncRNA upstream 28053 18445827 ~ 18446125 (+) True G1713245
TU1962870 lncRNA downstream 5064 18479455 ~ 18479662 (+) True G1713272
TU1962872 lncRNA downstream 6668 18481059 ~ 18481378 (+) True G1713274
TU1962879 lncRNA downstream 12540 18486931 ~ 18487222 (+) True G1713281
TU1962880 lncRNA downstream 12894 18487285 ~ 18487494 (+) True G1713282
TU1962885 lncRNA downstream 17244 18491635 ~ 18492013 (+) True G1713285
XM_021576941.2 mRNA upstream 99548 18366267 ~ 18374630 (+) True LOC110499881
XM_036957148.1 mRNA upstream 183979 18270787 ~ 18290199 (+) False LOC110499882
XM_036957149.1 mRNA upstream 183979 18270987 ~ 18290199 (+) True LOC110499882
XM_021576934.2 mRNA upstream 205487 18247128 ~ 18268691 (+) False si:dkey-159a18.1
XM_036957147.1 mRNA upstream 205492 18247128 ~ 18268686 (+) False si:dkey-159a18.1
XM_036957150.1 mRNA downstream 37284 18511675 ~ 18516033 (+) True LOC110499888
XM_036956481.1 mRNA downstream 93477 18567868 ~ 18596759 (+) False LOC100301653
XM_036956482.1 mRNA downstream 93480 18567871 ~ 18596759 (+) False LOC100301653
NM_001160486.1 mRNA downstream 103174 18577565 ~ 18594851 (+) True LOC100301653
XM_021576949.2 mRNA downstream 139292 18613683 ~ 18617804 (+) False LOC110499892
TU1962743 other upstream 206670 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 805592 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1530389 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1732960 16740403 ~ 16741218 (+) False LOC110499863
TU1961164 other upstream 1753708 16719955 ~ 16720470 (+) True G1711795
TU1962859 other downstream 22756 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 260400 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 910581 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 956332 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 956430 19430821 ~ 19618485 (+) False G1714090

Expression Profile