RNA id: TU1962859


Basic Information

Item Value
RNA id TU1962859
length 3507
RNA type TUCP
GC content 0.46
exon number 3
gene id G1713262
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18497147 ~ 18500874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaagtaatcttgatggttgtactgTCGTCTCacataaaactgtgaaggacctcggcgttactctggaccctgatctctcttttgacgaacatatcaagaatgtttcaaggacagctgttttccatctacgaaacattgcaaaaatcagaaactttctgtccaaaaattatgcagaaaaatgaatccatgcttctGTTACTTctggttagactactgcaatgctctactttctggctacccggataaagcactaaataaacttcagttagtgctaaatacaacTCCTAGAATCCTgcctagaaccaaaacatttgattatattactccagtgctagcctccctacactggcttcctgtcaaggcaagggctgatttcaaggttttactgctaacctacaaagtattacatgggcttgctcctacctatctctctgatttggtcctgccgtacatacctacacatacgctacggtcacaagatgcaggcctcctaattgtccctagaatttctaagcaaacagctggaggcagggctttctcctatagagctccatttttatggaatggtctgcctacccatgtgagagacgcagactcagtctcaacctttaagtctttactgaagactcatctcttcagtaggtcatatgattgagtgtagtctggcccaggagtgtgaaggtgaacggaaaggctctggagcaacgaaccgcccttgctgtctctgcctggccggttcccctctctccactgggattctctgcctcttaccctattacaggggctgagtcactggcttactggtgctcttccatgcctcccctaggaggggtgcgtcacttgagtgtgttgagtcgctgacgtgatcttcctgtctgggtttggaactcccccttgggttgtgccgtgacggagatctttgtgggttatactcggccttgtctcaggatggtaagttagtggttgaagatatccctctagtggtgtgggggctgtgctttggcaaagtgggtggggttatatcctgcctgtttggccctgtctgggggtatcattggatggggccacagagtctcctgacccctcctgtctcagcctccattatttatgctgcagtagtttatgtgtcggggggctagggtcagtctgttatatctggagtacttctcctgtcttatccggtgtcctgtgtgaatttaagtatgctctctctaattctctctttctttctctctttctttctttctctctcccggaggacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgcggctatggaagcctgacctgttcaccggacgtgcacctgtcccagacctgctgttttcaactctctagagacagcaagagaggtagagatactcccgaggtgctgacttgttgcaccctcaacaactactatgattattattatttgaccatgctggtaacttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggtttttgcctttctagggcgtttttcctagtcaccgtgcttctacagttgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtaagaagggctatataaatacatttgatttgatttgattgatcagGGCTCCAATTTCTGCACCGCTCTGCGAAGCCACTCACCTCACCTGACCCAGCTCTCTTGGTGAAAAGCACATGACGCATATCTTCCAGGAGTAGATGTCTCACCAGAGATATCACATCTCACTGAGATCCACTGAAGTCTCACCAGAGATATCACATCTCACAGATATCCACTGAAGTCTCACCAGAGATATCACATCTTACAGAGATCCACTGGAGAAGTCTCACCAGAGATATAACATCTCACAGATCCACTGGAGAGGTCTCACCAGAGATACCAAATCTCACAGATCCACTGGAGAGGTCTCACCAGAGATACCAAATCTCACAGAGATCCACTGGAGAAGTCTCACCAGAGATATCACATCTCACAGAGATCCACTGAAGTCTCACCAGAGATATCACATCTCACAGAGATCCACTGAAGTCTCACCAGAGATATCACATCTCACAGAGATCCACTGGAGAATTCTCACCAGAGATATCACATCTCACAGATCCACTGGACGAGTCTCACCAGAGATATCACATCTCACAGAGATCCACGAGAGAAGTCTTTGGGACGTGGGTGAGAGACCAGACAACTGGCATGACTAGTGGCAATCTGCCAAGGCAACTGGGCATACTGGGGAACAATAGCAGGACTGTGGGGAAGACTAGGACAGATGTGGGAGTGGGACAGACAGTCAAATCATAAGAACAAGAGAGACACTCTCAGTGTTCAGACTCATGACAGCTGATCTGTTCAGCTACGATGTAgatagatttgtgtgtgtgaaacatCTAACCTTGagttaataaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactctctctctgagctgtttATTGTAACTTTTCCTCATGATAATAAACAGGTGTCCTCTTAGACACTGTGCTGTGtcctactgtctctcctcctccaccactctgtctctttttactcatctaccactcaccctcacaggtctctcctcctccaccactctATCACTTTTTACTCATCTACCACTCACCCTCAcaggtctctcctcctccaccactctgtctctttttactcatctaccactcaccctcacaggtctctcctcctccaccactcgGTCACTTTTTACTCATCTACCACTCACCCTCACAGGTCCGCGACATTACGTCACCACCGCGGGGAAACAAGGAGTACAGCCAAAAGTGCCAACAACAGACGGCATTCTCTGTTATGTTGTTTGATTATGGTCCGCAcccacactcacgcacacacactcatgcacgcgcacacacacacactgtatttcaAACAGCTCGGTTATGATTTGGTTCCAGATGGTGTAATTAGTTATTCATATTTTAATGTATTCCTTGGTTTCATCTTTCAGgacatatgatatggtaaacaATCTATTAATACTCAGCAGTGATCTGTATGCTTATGTAATATTATGCAATACAGACTGTTATCAAGGCAACCTGTGGTCTCGTTTGTGGTCCTTTAGCGCCCCCACATGTTTTTTTTCTACATGCACAGCTGTGGATAAGGCCTTGTTTTTTCCATATGAAATGCTGTGTCTGATTCATTGATCATTTTCTATCTTCAGTGAAactttaaatacattttgtttggACTCTTTTTCATTGTCATATTCCATTCCCACGTGATCATCGGTCTATTATTGTAACCca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962885 lncRNA upstream 5134 18491635 ~ 18492013 (+) True G1713285
TU1962880 lncRNA upstream 9653 18487285 ~ 18487494 (+) True G1713282
TU1962879 lncRNA upstream 9925 18486931 ~ 18487222 (+) True G1713281
TU1962872 lncRNA upstream 15769 18481059 ~ 18481378 (+) True G1713274
TU1962870 lncRNA upstream 17485 18479455 ~ 18479662 (+) True G1713272
TU1962887 lncRNA downstream 1392 18502266 ~ 18504320 (+) True G1713287
TU1962826 lncRNA downstream 16865 18517739 ~ 18518368 (+) True G1713233
TU1962925 lncRNA downstream 85198 18586072 ~ 18586667 (+) True G1713324
TU1962936 lncRNA downstream 111513 18612387 ~ 18612629 (+) True G1713332
TU1962960 lncRNA downstream 159481 18660355 ~ 18660684 (+) True G1713351
XM_021576941.2 mRNA upstream 122517 18366267 ~ 18374630 (+) True LOC110499881
XM_036957148.1 mRNA upstream 206948 18270787 ~ 18290199 (+) False LOC110499882
XM_036957149.1 mRNA upstream 206948 18270987 ~ 18290199 (+) True LOC110499882
XM_021576934.2 mRNA upstream 228456 18247128 ~ 18268691 (+) False si:dkey-159a18.1
XM_036957147.1 mRNA upstream 228461 18247128 ~ 18268686 (+) False si:dkey-159a18.1
XM_036957150.1 mRNA downstream 10801 18511675 ~ 18516033 (+) True LOC110499888
XM_036956481.1 mRNA downstream 66994 18567868 ~ 18596759 (+) False LOC100301653
XM_036956482.1 mRNA downstream 66997 18567871 ~ 18596759 (+) False LOC100301653
NM_001160486.1 mRNA downstream 76691 18577565 ~ 18594851 (+) True LOC100301653
XM_021576949.2 mRNA downstream 112809 18613683 ~ 18617804 (+) False LOC110499892
TU1962743 other upstream 229639 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 828561 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1553358 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1755929 16740403 ~ 16741218 (+) False LOC110499863
TU1961163 other upstream 1776677 16719955 ~ 16720470 (+) False G1711795
TU1962997 other downstream 233917 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 884098 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 929849 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 929947 19430821 ~ 19618485 (+) False G1714090
TU1963871 other downstream 929947 19430821 ~ 19587820 (+) False G1714090

Expression Profile