RNA id: TU1962969


Basic Information

Item Value
RNA id TU1962969
length 221
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id G1713360
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18687775 ~ 18687995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTAATATTCATACTCCTGAGGACAGACAGAATAGCGCAAACTATTTCATTCAGCCGAATTTGTCTCACACAAACATAAAACATTACGCAACCCTCGTCTTTCTAATCAGATTGTGAACATTAACTTGCGTCACATCTTTCCTGAGTCATTGCTGACTAATAAAAGGACAAGTAGGAAGATAGACTTCTGTTCTTTCTGTATTTACTAAAACATTATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962968 lncRNA upstream 772 18686661 ~ 18687003 (+) True G1713359
TU1962952 lncRNA upstream 1351 18683408 ~ 18686424 (+) True G1713343
TU1962948 lncRNA upstream 13809 18672363 ~ 18673966 (+) False si:ch211-244b2.3
TU1962950 lncRNA upstream 14869 18672363 ~ 18672906 (+) True si:ch211-244b2.3
TU1962951 lncRNA upstream 14920 18671875 ~ 18672855 (+) False si:ch211-244b2.3
TU1962971 lncRNA downstream 3414 18691409 ~ 18691750 (+) True G1713362
TU1962972 lncRNA downstream 4130 18692125 ~ 18692427 (+) True G1713363
TU1962974 lncRNA downstream 7909 18695904 ~ 18696123 (+) True G1713365
TU1962976 lncRNA downstream 9284 18697279 ~ 18699137 (+) False G1713366
TU1962975 lncRNA downstream 10630 18698625 ~ 18699137 (+) True G1713366
XM_021576957.2 mRNA upstream 4469 18671913 ~ 18683306 (+) False si:ch211-244b2.3
XM_036957152.1 mRNA upstream 33513 18630643 ~ 18654262 (+) False LOC110499894
XM_036957153.1 mRNA upstream 33513 18631073 ~ 18654262 (+) True LOC110499894
XM_036957151.1 mRNA upstream 59364 18621177 ~ 18628411 (+) False LOC110499893
NM_001124400.1 mRNA downstream 31313 18719308 ~ 18720592 (+) True fut9
XM_021576958.2 mRNA downstream 38702 18726697 ~ 18734052 (+) True LOC110499900
XM_036957155.1 mRNA downstream 52391 18740386 ~ 18754645 (+) False LOC110499901
XM_036957156.1 mRNA downstream 52550 18740545 ~ 18754645 (+) False LOC110499901
XM_021576960.2 mRNA downstream 52551 18740546 ~ 18754645 (+) False LOC110499901
TU1962859 other upstream 186901 18497147 ~ 18500874 (+) True G1713262
TU1962743 other upstream 420267 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 1019189 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1743986 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1946557 16740403 ~ 16741218 (+) False LOC110499863
TU1962997 other downstream 46796 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 696977 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 742728 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 742826 19430821 ~ 19618485 (+) False G1714090
TU1963871 other downstream 742826 19430821 ~ 19587820 (+) False G1714090

Expression Profile