RNA id: TU1962971


Basic Information

Item Value
RNA id TU1962971
length 342
lncRNA type intronic
GC content 0.41
exon number 1
gene id G1713362
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18691409 ~ 18691750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttcattgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962969 lncRNA upstream 3414 18687775 ~ 18687995 (+) True G1713360
TU1962968 lncRNA upstream 4406 18686661 ~ 18687003 (+) True G1713359
TU1962952 lncRNA upstream 4985 18683408 ~ 18686424 (+) True G1713343
TU1962948 lncRNA upstream 17443 18672363 ~ 18673966 (+) False si:ch211-244b2.3
TU1962972 lncRNA downstream 375 18692125 ~ 18692427 (+) True G1713363
TU1962974 lncRNA downstream 4154 18695904 ~ 18696123 (+) True G1713365
TU1962976 lncRNA downstream 5529 18697279 ~ 18699137 (+) False G1713366
TU1962975 lncRNA downstream 6875 18698625 ~ 18699137 (+) True G1713366
TU1962978 lncRNA downstream 11894 18703644 ~ 18704448 (+) True G1713368
XM_021576957.2 mRNA upstream 8103 18671913 ~ 18683306 (+) False si:ch211-244b2.3
XM_036957152.1 mRNA upstream 37147 18630643 ~ 18654262 (+) False LOC110499894
XM_036957153.1 mRNA upstream 37147 18631073 ~ 18654262 (+) True LOC110499894
XM_036957151.1 mRNA upstream 62998 18621177 ~ 18628411 (+) False LOC110499893
NM_001124400.1 mRNA downstream 27558 18719308 ~ 18720592 (+) True fut9
XM_021576958.2 mRNA downstream 34947 18726697 ~ 18734052 (+) True LOC110499900
XM_036957155.1 mRNA downstream 48636 18740386 ~ 18754645 (+) False LOC110499901
XM_036957156.1 mRNA downstream 48795 18740545 ~ 18754645 (+) False LOC110499901
XM_021576960.2 mRNA downstream 48796 18740546 ~ 18754645 (+) False LOC110499901
TU1962859 other upstream 190535 18497147 ~ 18500874 (+) True G1713262
TU1962743 other upstream 423901 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 1022823 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1747620 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1950191 16740403 ~ 16741218 (+) False LOC110499863
TU1962997 other downstream 43041 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 693222 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 738973 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 739071 19430821 ~ 19618485 (+) False G1714090
TU1963871 other downstream 739071 19430821 ~ 19587820 (+) False G1714090

Expression Profile