RNA id: TU1962997


Basic Information

Item Value
RNA id TU1962997
length 2646
RNA type TUCP
GC content 0.41
exon number 1
gene id G1713384
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18734791 ~ 18737436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttccgaagacactgGGCCCTTTCCAAAGTTACCCCTGGACAGGGCAAACCAcacccacttttccaaaacaCAACCCCCACACCAACATAGGGATAACAACAAACcactaacttactaccctgagacaaggccaagtatagcccacaaagagtacaggaaggatgggagagctcaagcaagccagtgactcagtcccCGCAATAGGGTCAGAGGAAGAGAAtcccagtagagagaggggagccggccaggcagagacagcaagggtggttaaTCACTCCAGTGCCTTGATGTTCAACCTTCGCACCTCCAAACTTGACTGTTGAATGTTCTTTTTTTGCACACTGTTTGCATAGTTATTTCATTGTTTGGACAGAATATACTGTGATTACAAATGTGAAATATCATGTAAATGTCTATCACACTAATGTCTTGTCATGACAGAAAAGGTAACAAGTTATAGTTACTCACATTTAAATCATTATTTGCCCAGATATCTGCTGATTCCAGTAATTCTGTTATTGTTTCAGGGTAATAAACTGACAATACAAGAGCAATGGTTTATTGCACTGAACAGGGTTTGAGAATGATGGATGGAAAAGAGGAACTCTGTTACCATAGTGTTCTTGTATTGTTAACCCTCTTGCACAAAGAATGTGGTATTACCATGAAACAATGCTGAAGGTGTTTCTGAGCAAATAGTGTTTGGAAAAATATAACTAGcaaataatgtaatgtaatgtcaaatcaaattgtatttgtcacatgtgccaaatacaacaggtgtagtagaccttacagtgaaatgcttaattacaagcccttaaccaacaatgcagttaagaaaaataagtgttaagaaagtatttaataacataaactgaagtaaaaaatgtaaacattaaaACATTCTTATAAAAAgataagaaaatagaaaaataacaaataattaaagagcaacaataaaataacagaaaaGAGCCTATGTACACGGGgtcccggtacagagtcaaagtgcgggagcacaggttagttgaggtaattgaggtaatatgtacatgtaggtagaggtagtgactatacatagataataaacagagagtagcagcagcagcgtaaaaatggggtggggggtggggtcaAATAGTACAggtagccatttaattagctgttcaggagtcttatggcttgggggtagaagctcttaagaagcattttggacctagacttacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcatgcttcaaacataaagatataaagatataaagatatgaagaatcaacaacaagtgggacacaatcaagaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaacagaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacattccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagacaacggcaaatctaccaagacctggccgtccatctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagttgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagcaatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatgtagccaaatacaggaccattctggaagaaaacctgatggagtctgtaaaagacctgatggagtctgcaaaagacctgagactgggacagagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatatgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaacatttcggtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962989 lncRNA upstream 10333 18724053 ~ 18724458 (+) True G1713379
TU1962982 lncRNA upstream 25690 18708772 ~ 18709101 (+) True G1713372
TU1962979 lncRNA upstream 29370 18705155 ~ 18705421 (+) True G1713369
TU1962978 lncRNA upstream 30343 18703644 ~ 18704448 (+) True G1713368
TU1962976 lncRNA upstream 35654 18697279 ~ 18699137 (+) False G1713366
TU1962999 lncRNA downstream 194 18737630 ~ 18738946 (+) True G1713385
TU1963000 lncRNA downstream 2070 18739506 ~ 18740125 (+) True G1713386
TU1963042 lncRNA downstream 87028 18824464 ~ 18825189 (+) False G1713421
TU1963043 lncRNA downstream 87028 18824464 ~ 18825189 (+) True G1713421
TU1963494 lncRNA downstream 118485 18855921 ~ 18856161 (+) True G1713808
XM_021576958.2 mRNA upstream 739 18726697 ~ 18734052 (+) True LOC110499900
NM_001124400.1 mRNA upstream 14199 18719308 ~ 18720592 (+) True fut9
XM_021576957.2 mRNA upstream 51485 18671913 ~ 18683306 (+) False si:ch211-244b2.3
XM_036957152.1 mRNA upstream 80529 18630643 ~ 18654262 (+) False LOC110499894
XM_036957153.1 mRNA upstream 80529 18631073 ~ 18654262 (+) True LOC110499894
XM_036957155.1 mRNA downstream 2950 18740386 ~ 18754645 (+) False LOC110499901
XM_036957156.1 mRNA downstream 3109 18740545 ~ 18754645 (+) False LOC110499901
XM_021576960.2 mRNA downstream 3110 18740546 ~ 18754645 (+) False LOC110499901
XM_036957154.1 mRNA downstream 3110 18740546 ~ 18754645 (+) False LOC110499901
XM_036957157.1 mRNA downstream 6403 18743839 ~ 18754645 (+) True LOC110499901
TU1962859 other upstream 233917 18497147 ~ 18500874 (+) True G1713262
TU1962743 other upstream 467283 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 1066205 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1791002 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1993573 16740403 ~ 16741218 (+) False LOC110499863
TU1963841 other downstream 647536 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 693287 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 693385 19430821 ~ 19618485 (+) False G1714090
TU1963871 other downstream 693385 19430821 ~ 19587820 (+) False G1714090
TU1963881 other downstream 723241 19460677 ~ 19472756 (+) False G1714090

Expression Profile