RNA id: TU1963042


Basic Information

Item Value
RNA id TU1963042
length 354
lncRNA type intronic
GC content 0.39
exon number 3
gene id G1713421
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18824464 ~ 18825189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gGTTACAGACCCAGcaatattatatagtatcccctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacatacccaacaacattatatagtatctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacatacccaacaacattatatagtatctcctcatggttacagacccaacaacattatatagtatcccctcctcatggttacatacccaacaacattatatagtatcctttcctcatggttacagacccaacaacattttatagtatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963000 lncRNA upstream 84339 18739506 ~ 18740125 (+) True G1713386
TU1962999 lncRNA upstream 85518 18737630 ~ 18738946 (+) True G1713385
TU1962996 lncRNA upstream 88340 18734791 ~ 18736124 (+) False G1713384
TU1962989 lncRNA upstream 100006 18724053 ~ 18724458 (+) True G1713379
TU1962982 lncRNA upstream 115363 18708772 ~ 18709101 (+) True G1713372
TU1963494 lncRNA downstream 30732 18855921 ~ 18856161 (+) True G1713808
TU1963500 lncRNA downstream 34461 18859650 ~ 18859869 (+) True G1713814
TU1963504 lncRNA downstream 37825 18863014 ~ 18863254 (+) True G1713818
TU1963506 lncRNA downstream 38517 18863706 ~ 18866161 (+) True G1713820
TU1963510 lncRNA downstream 42251 18867440 ~ 18869695 (+) True G1713824
XM_036957161.1 mRNA upstream 53932 18758459 ~ 18770532 (+) False LOC110499903
XM_036957162.1 mRNA upstream 53932 18758459 ~ 18770532 (+) False LOC110499903
XM_036957163.1 mRNA upstream 53932 18758460 ~ 18770532 (+) False LOC110499903
XM_036957164.1 mRNA upstream 53932 18758610 ~ 18770532 (+) True LOC110499903
XM_036957165.1 mRNA upstream 55172 18758459 ~ 18769292 (+) False LOC110499903
XM_021578520.2 mRNA downstream 398248 19223437 ~ 19226634 (+) True LOC110501017
XR_005038545.1 mRNA downstream 435556 19260745 ~ 19279035 (+) True LOC118942896
XM_036957187.1 mRNA downstream 477179 19302368 ~ 19306083 (+) False bik
XM_036957188.1 mRNA downstream 477310 19302499 ~ 19306083 (+) True bik
XR_002470041.2 mRNA downstream 506775 19331964 ~ 19337651 (+) True LOC110499913
TU1962997 other upstream 87028 18734791 ~ 18737436 (+) True G1713384
TU1962859 other upstream 323590 18497147 ~ 18500874 (+) True G1713262
TU1962743 other upstream 556956 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 1155878 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1880675 16914220 ~ 16943789 (+) False LOC110501009
TU1963841 other downstream 559783 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 605534 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 605632 19430821 ~ 19618485 (+) False G1714090
TU1963871 other downstream 605632 19430821 ~ 19587820 (+) False G1714090
TU1963881 other downstream 635488 19460677 ~ 19472756 (+) False G1714090

Expression Profile