RNA id: TU1963504


Basic Information

Item Value
RNA id TU1963504
length 241
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1713818
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18863014 ~ 18863254 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAAGCATTTGTAAAACATTGTGGCTTCCTCCTTATCTCGAAACCTGCTGGCTTCTGGGGCCTGTTCAGGAGAGTGCAAAGTTAAAGCCTATGGTGTTGTTATGTAGCTTTTAGACAATATCCATCCTTTCCTCCCCATACCGTCTGGTCATCCCAAACACTGACGAATTCAATTGCATAAATACAATCCCTCAGGTCATAGGCTTTAAAGTGTATAGTAGATAGTTTGTCAACCCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963500 lncRNA upstream 3145 18859650 ~ 18859869 (+) True G1713814
TU1963494 lncRNA upstream 6853 18855921 ~ 18856161 (+) True G1713808
TU1963042 lncRNA upstream 37825 18824464 ~ 18825189 (+) False G1713421
TU1963043 lncRNA upstream 37825 18824464 ~ 18825189 (+) True G1713421
TU1963000 lncRNA upstream 122889 18739506 ~ 18740125 (+) True G1713386
TU1963506 lncRNA downstream 452 18863706 ~ 18866161 (+) True G1713820
TU1963510 lncRNA downstream 4186 18867440 ~ 18869695 (+) True G1713824
TU1963511 lncRNA downstream 7182 18870436 ~ 18871764 (+) True G1713825
TU1963516 lncRNA downstream 17547 18880801 ~ 18881658 (+) True G1713830
TU1963520 lncRNA downstream 23281 18886535 ~ 18887201 (+) True G1713834
XM_036957158.1 mRNA upstream 22554 18770248 ~ 18840460 (+) False LOC110499902
XM_036957160.1 mRNA upstream 22554 18771569 ~ 18840460 (+) True LOC110499902
XM_036957159.1 mRNA upstream 24590 18770251 ~ 18838424 (+) False LOC110499902
XM_036957163.1 mRNA upstream 92482 18758460 ~ 18770532 (+) False LOC110499903
XM_021578520.2 mRNA downstream 360183 19223437 ~ 19226634 (+) True LOC110501017
XR_005038545.1 mRNA downstream 397491 19260745 ~ 19279035 (+) True LOC118942896
XM_036957187.1 mRNA downstream 439114 19302368 ~ 19306083 (+) False bik
XM_036957188.1 mRNA downstream 439245 19302499 ~ 19306083 (+) True bik
XR_002470041.2 mRNA downstream 468710 19331964 ~ 19337651 (+) True LOC110499913
TU1962997 other upstream 125578 18734791 ~ 18737436 (+) True G1713384
TU1962859 other upstream 362140 18497147 ~ 18500874 (+) True G1713262
TU1962743 other upstream 595506 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 1194428 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1919225 16914220 ~ 16943789 (+) False LOC110501009
TU1963841 other downstream 521718 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 567469 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 567567 19430821 ~ 19618485 (+) False G1714090
TU1963871 other downstream 567567 19430821 ~ 19587820 (+) False G1714090
TU1963881 other downstream 597423 19460677 ~ 19472756 (+) False G1714090

Expression Profile