RNA id: TU1963511


Basic Information

Item Value
RNA id TU1963511
length 288
lncRNA type intronic
GC content 0.40
exon number 3
gene id G1713825
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18870436 ~ 18871764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagaggtctgagagaacaagagagagagaggtctgagagaacaagagagagagagagagagaggggtctggggctgagagaacaggagagagagagagagttatagtgGAGAGGCACGATCACAGACTTCCACACCAACACTTAAATATGGAGGCACTTGCTTTAGGTCTGAAAATATATTGTTGGCCTCATATCAACGTACGTATCACAATGTGTTTTAATGAGTAAAGAAAACAGTATAAAATTTATAATATTTACTAATAATCTCCATACTGTACTCTAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963510 lncRNA upstream 741 18867440 ~ 18869695 (+) True G1713824
TU1963506 lncRNA upstream 4275 18863706 ~ 18866161 (+) True G1713820
TU1963504 lncRNA upstream 7182 18863014 ~ 18863254 (+) True G1713818
TU1963500 lncRNA upstream 10567 18859650 ~ 18859869 (+) True G1713814
TU1963494 lncRNA upstream 14275 18855921 ~ 18856161 (+) True G1713808
TU1963516 lncRNA downstream 9037 18880801 ~ 18881658 (+) True G1713830
TU1963520 lncRNA downstream 14771 18886535 ~ 18887201 (+) True G1713834
TU1963644 lncRNA downstream 273181 19144945 ~ 19146135 (+) True G1713942
TU1963698 lncRNA downstream 288521 19160285 ~ 19160808 (+) False G1713990
TU1963699 lncRNA downstream 288521 19160285 ~ 19160808 (+) True G1713990
XM_036957158.1 mRNA upstream 29976 18770248 ~ 18840460 (+) False LOC110499902
XM_036957160.1 mRNA upstream 29976 18771569 ~ 18840460 (+) True LOC110499902
XM_036957159.1 mRNA upstream 32012 18770251 ~ 18838424 (+) False LOC110499902
XM_036957163.1 mRNA upstream 99904 18758460 ~ 18770532 (+) False LOC110499903
XM_021578520.2 mRNA downstream 351673 19223437 ~ 19226634 (+) True LOC110501017
XR_005038545.1 mRNA downstream 388981 19260745 ~ 19279035 (+) True LOC118942896
XM_036957187.1 mRNA downstream 430604 19302368 ~ 19306083 (+) False bik
XM_036957188.1 mRNA downstream 430735 19302499 ~ 19306083 (+) True bik
XR_002470041.2 mRNA downstream 460200 19331964 ~ 19337651 (+) True LOC110499913
TU1962997 other upstream 133000 18734791 ~ 18737436 (+) True G1713384
TU1962859 other upstream 369562 18497147 ~ 18500874 (+) True G1713262
TU1962743 other upstream 602928 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 1201850 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1926647 16914220 ~ 16943789 (+) False LOC110501009
TU1963841 other downstream 513208 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 558959 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 559057 19430821 ~ 19618485 (+) False G1714090
TU1963871 other downstream 559057 19430821 ~ 19587820 (+) False G1714090
TU1963881 other downstream 588913 19460677 ~ 19472756 (+) False G1714090

Expression Profile