RNA id: TU1963698


Basic Information

Item Value
RNA id TU1963698
length 386
lncRNA type intronic
GC content 0.49
exon number 2
gene id G1713990
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19160285 ~ 19160808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagacagggtgtaccggtacagagtcaatgtggaggctatagacagggtgtactggtacagagtcaatgtggaggctatagacagggtgtaccagtacagagtcaatgtggaggctatagacagggtgtaccggtacagagtcaatgtggaggctatagacagggtgtaccggtacagagtcaatgtggaggctatagacagggtgtactggtacagagtcaatgtggaggctatagacagggtgtactgtctatagacagggtgtaccggtacagagtcaatgtggaggctatagacagggtgtaccagtacagagtcaatgtggaggctatagacagggtgtaccggtacagagtcaatatggaggctatagacagggtgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963644 lncRNA upstream 14150 19144945 ~ 19146135 (+) True G1713942
TU1963520 lncRNA upstream 273084 18886535 ~ 18887201 (+) True G1713834
TU1963516 lncRNA upstream 278627 18880801 ~ 18881658 (+) True G1713830
TU1963511 lncRNA upstream 288521 18870436 ~ 18871764 (+) True G1713825
TU1963510 lncRNA upstream 290590 18867440 ~ 18869695 (+) True G1713824
TU1963658 lncRNA downstream 13299 19174107 ~ 19176108 (+) False G1713953
TU1963659 lncRNA downstream 15008 19175816 ~ 19176169 (+) True G1713953
TU1963746 lncRNA downstream 73317 19234125 ~ 19234357 (+) True G1714034
TU1963747 lncRNA downstream 74030 19234838 ~ 19235054 (+) True G1714035
TU1963783 lncRNA downstream 140017 19300825 ~ 19302229 (+) True G1714066
XM_036957158.1 mRNA upstream 319825 18770248 ~ 18840460 (+) False LOC110499902
XM_036957160.1 mRNA upstream 319825 18771569 ~ 18840460 (+) True LOC110499902
XM_036957159.1 mRNA upstream 321861 18770251 ~ 18838424 (+) False LOC110499902
XM_036957163.1 mRNA upstream 389753 18758460 ~ 18770532 (+) False LOC110499903
XM_021578520.2 mRNA downstream 62629 19223437 ~ 19226634 (+) True LOC110501017
XR_005038545.1 mRNA downstream 99937 19260745 ~ 19279035 (+) True LOC118942896
XM_036957187.1 mRNA downstream 141560 19302368 ~ 19306083 (+) False bik
XM_036957188.1 mRNA downstream 141691 19302499 ~ 19306083 (+) True bik
XR_002470041.2 mRNA downstream 171156 19331964 ~ 19337651 (+) True LOC110499913
TU1962997 other upstream 422849 18734791 ~ 18737436 (+) True G1713384
TU1962859 other upstream 659411 18497147 ~ 18500874 (+) True G1713262
TU1962743 other upstream 892777 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 1491699 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 2216496 16914220 ~ 16943789 (+) False LOC110501009
TU1963841 other downstream 224164 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 269915 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 270013 19430821 ~ 19618485 (+) False G1714090
TU1963871 other downstream 270013 19430821 ~ 19587820 (+) False G1714090
TU1963881 other downstream 299869 19460677 ~ 19472756 (+) False G1714090

Expression Profile