RNA id: TU1963810


Basic Information

Item Value
RNA id TU1963810
length 432
lncRNA type intronic
GC content 0.37
exon number 3
gene id G1714087
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19340898 ~ 19341419 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttcaaatgactgctggacttgaacttgtttagttgttggaagAGTGTGCTTAGTATTTTCctgcttttgttctgtgtagcgctgtatttttcgtggcgtcattacgtcatctacctacattatataggtatgcacatcatctacctacattatataggtatgcacgtcatctacctacattatataggtatgcacgtcatctacctacattatataggtatgcacgtcatctacctacattatataggtatgcacgtcatctacctacattatataggtatgcacgtcatctacctacattatataggtatgtacgtcatctacctacattatataggtatgcacgtcatctacctacattatataggtatgtacgtcatctacctacattatataggtatgcacgtcatctacctacattatattggta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963794 lncRNA upstream 19255 19321389 ~ 19321643 (+) True G1714074
TU1963783 lncRNA upstream 38669 19300825 ~ 19302229 (+) True G1714066
TU1963747 lncRNA upstream 105844 19234838 ~ 19235054 (+) True G1714035
TU1963746 lncRNA upstream 106541 19234125 ~ 19234357 (+) True G1714034
TU1963659 lncRNA upstream 164729 19175816 ~ 19176169 (+) True G1713953
TU1963802 lncRNA downstream 12461 19353880 ~ 19354892 (+) True G1714082
TU1963940 lncRNA downstream 18767 19360186 ~ 19360889 (+) True G1714126
TU1963948 lncRNA downstream 45030 19386449 ~ 19433764 (+) True G1714133
TU1963911 lncRNA downstream 58618 19400037 ~ 19405559 (+) True G1714097
TU1963949 lncRNA downstream 64237 19405656 ~ 19439604 (+) True G1714134
XR_002470041.2 mRNA upstream 3247 19331964 ~ 19337651 (+) True LOC110499913
XM_036957187.1 mRNA upstream 34815 19302368 ~ 19306083 (+) False bik
XM_036957188.1 mRNA upstream 34815 19302499 ~ 19306083 (+) True bik
XR_005038545.1 mRNA upstream 61863 19260745 ~ 19279035 (+) True LOC118942896
XM_021578520.2 mRNA upstream 114264 19223437 ~ 19226634 (+) True LOC110501017
XR_005038546.1 mRNA downstream 43573 19384992 ~ 19388072 (+) True LOC118942905
XM_036958467.1 mRNA downstream 83974 19425393 ~ 19431499 (+) True LOC110499932
XR_005038547.1 mRNA downstream 367795 19709214 ~ 19709762 (+) True LOC118942906
XM_021576977.2 mRNA downstream 400705 19742124 ~ 19752304 (+) False LOC110499917
XM_021576979.2 mRNA downstream 400706 19742125 ~ 19752304 (+) True LOC110499917
TU1962997 other upstream 603462 18734791 ~ 18737436 (+) True G1713384
TU1962859 other upstream 840024 18497147 ~ 18500874 (+) True G1713262
TU1962743 other upstream 1073390 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 1672312 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 2397109 16914220 ~ 16943789 (+) False LOC110501009
TU1963841 other downstream 43553 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 89304 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 89402 19430821 ~ 19618485 (+) False G1714090
TU1963871 other downstream 89402 19430821 ~ 19587820 (+) False G1714090
TU1963881 other downstream 119258 19460677 ~ 19472756 (+) False G1714090

Expression Profile